PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast04G121500.3.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family Trihelix
Protein Properties Length: 561aa    MW: 61259.1 Da    PI: 4.0222
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast04G121500.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix902.6e-2826110186
            trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                         rW+k+ev aLi +r e++e  ++   k++lW+++s+ mr  g++rs+k+Ckekwen+nk++kk+ke++k+r +++ + cpyf+qle
  Brast04G121500.3.p  26 RWPKEEVDALIWLRMEKDELCQDLGGKGQLWDDISAGMRNMGYHRSSKRCKEKWENINKYFKKVKESKKRR-PQDAKMCPYFHQLE 110
                         8********************************************************************97.99999********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd122031.17E-232590No hitNo description
PfamPF138371.7E-1926111No hitNo description
PROSITE profilePS500907.0852683IPR017877Myb-like domain
Sequence ? help Back to Top
Protein Sequence    Length: 561 aa     Download sequence    Send to blast
MQPVVAGRLG GGESNGGNNN ESGMPRWPKE EVDALIWLRM EKDELCQDLG GKGQLWDDIS  60
AGMRNMGYHR SSKRCKEKWE NINKYFKKVK ESKKRRPQDA KMCPYFHQLE DIYRKRQQFT  120
MSGSGGSSSI APGDTMVTVS EQAVLEQENH QCELQGNIGD DFGMMGNDRG GNSDAPSCNN  180
GDTAMDTTVL DDNAINEEEN PQRELEDKIN NDLSMVENTE GKNLDTPPSN GGDTTMDTVV  240
LDDRSINKVE DKINNDLGMV ENTERKNLDT PPSNGGDTAM DTVVLDDCSI NKEENPQREL  300
EVKIKNNLSI MGNGGGGDNL LAPLRNGGDT PMDINVVDNM VKNKQENPMR EFEGKISNNC  360
SMMDNGGGDN LHAPLSNDDT TGDTTVLDES TINIEENLLA PPCNVGKMAI DTAMLDESAI  420
NEENPSCELE NKISIDFNKM DNGEGENLLS QPSNCDDTAV DTTMLDESAI NKDENHWCEL  480
EGNINNDFGM MGNKGGENLI AAPNDGGDTT IDTTVLDDNT VNNEQNPPRD LEGKISTDFA  540
MMINGGGENL LPHQEVGTIP *
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast04G121500.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010235774.20.0LOW QUALITY PROTEIN: uncharacterized protein LOC100830336
TrEMBLA0A2K2D4D90.0A0A2K2D4D9_BRADI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.12e-37Trihelix family protein