PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Brast04G121000.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 238aa MW: 26702.5 Da PI: 4.4599 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 58.4 | 1.2e-18 | 41 | 96 | 2 | 56 |
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkklgLterqVkvWFqNrRakek 56 r++++ft+eq++ Le+ F++ ++ +e++eLA++lgL+ rqV +WFqN+Ra+++ Brast04G121000.1.p 41 RNKRRFTDEQVRSLESTFHSrRAKLEPREKAELARELGLQPRQVAIWFQNKRARWR 96 67889**************9899********************************9 PP | |||||||
2 | HD-ZIP_I/II | 120.1 | 1.1e-38 | 42 | 134 | 2 | 93 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeee.kLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 +krr+++eqv++LE++F++++ kLep++K+elareLglqprqva+WFqn+RAR+++kqlE+d++ L+++ydal+++ e+L++e+ +L+++l Brast04G121000.1.p 42 NKRRFTDEQVRSLESTFHSRRaKLEPREKAELARELGLQPRQVAIWFQNKRARWRSKQLEHDFADLRAHYDALHARVESLKQEKLTLAAQL 132 79****************9999*******************************************************************99 PP HD-ZIP_I/II 92 ke 93 +e Brast04G121000.1.p 133 EE 134 86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 5.43E-18 | 31 | 100 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 18.204 | 37 | 98 | IPR001356 | Homeobox domain |
SMART | SM00389 | 7.0E-18 | 39 | 102 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 4.3E-16 | 41 | 96 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.01E-16 | 41 | 99 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.6E-19 | 41 | 103 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 5.6E-7 | 69 | 78 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 73 | 96 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 5.6E-7 | 78 | 94 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 9.6E-14 | 98 | 139 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 238 aa Download sequence Send to blast |
MESDCQFLLA PPMYAAAADD DGCQFLQQQQ QQLMGGSSGE RNKRRFTDEQ VRSLESTFHS 60 RRAKLEPREK AELARELGLQ PRQVAIWFQN KRARWRSKQL EHDFADLRAH YDALHARVES 120 LKQEKLTLAA QLEELKEKLN GRQDQSASSG AAEPDEVEVE HDKINNNNVG CVVEEEEAEG 180 AAPVVDVGSD ESAVGWYEYE RLAYGGAAAA LQPEPFCATP ELWETTTWPL VEWNAVA* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Brast04G121000.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: In leaves by drought stress. {ECO:0000269|PubMed:17999151}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK367456 | 1e-136 | AK367456.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2057H16. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003569986.1 | 1e-118 | homeobox-leucine zipper protein HOX24 | ||||
Swissprot | A2X7U1 | 4e-82 | HOX24_ORYSI; Homeobox-leucine zipper protein HOX24 | ||||
TrEMBL | I1IC31 | 1e-117 | I1IC31_BRADI; Uncharacterized protein | ||||
STRING | BRADI3G50220.1 | 1e-118 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4027 | 31 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46680.2 | 6e-31 | homeobox 7 |
Link Out ? help Back to Top | |
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Phytozome | Brast04G121000.1.p |