PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast04G114400.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C2H2
Protein Properties Length: 314aa    MW: 32490.2 Da    PI: 7.4776
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast04G114400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.91.7e-05526223
                        EETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                        +C+ C+++F ++  L  H+r+H
  Brast04G114400.1.p  5 TCKLCSRRFASPRALAGHMRSH 26
                        6********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.681427IPR007087Zinc finger, C2H2
SMARTSM003550.0078426IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.24E-7526No hitNo description
PfamPF139121.2E-4626IPR007087Zinc finger, C2H2
PROSITE patternPS000280626IPR007087Zinc finger, C2H2
SuperFamilySSF576671.24E-7165192No hitNo description
PROSITE profilePS501579.078170192IPR007087Zinc finger, C2H2
SMARTSM003550.28170192IPR015880Zinc finger, C2H2-like
PfamPF139122.3E-9170192IPR007087Zinc finger, C2H2
PROSITE patternPS000280172192IPR007087Zinc finger, C2H2
PROSITE profilePS501578.954232254IPR007087Zinc finger, C2H2
SMARTSM003555.6232254IPR015880Zinc finger, C2H2-like
PfamPF139126.4E-10232254IPR007087Zinc finger, C2H2
PROSITE patternPS000280234254IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MTKNTCKLCS RRFASPRALA GHMRSHSVAA AAAAKQQQIS SASSASTSIA AAANDEAAGF  60
KKPLPIYALR ENPKRSLRVS DAGFSDHESE AESTAPRGKR AHAAAAEPLS SVSDAATPEE  120
DVALSLMMLS RDSWPSSSAG DYWDDDGRDG GGHTLPAPDP APAVEKRTRF QCGACKKVFR  180
SYQALGGHRA SHVRGGRGGC CAPPVASPPP PQPPLMERDG DEAMEDGKGQ PRECPYCYRA  240
FASGKALGGH KRSHVCSAAA AAAAAAAAQA EEAAAPPDPI KAFGMIDLNV ALPVEEVELS  300
AVSDPRFSSN PSS*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00416DAPTransfer from AT3G60580Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast04G114400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003570033.11e-151zinc finger protein ZAT1
TrEMBLI1ICA51e-150I1ICA5_BRADI; Uncharacterized protein
STRINGBRADI3G50790.11e-151(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35183377
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.12e-25C2H2-like zinc finger protein