PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast04G112900.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family GRAS
Protein Properties Length: 713aa    MW: 74051.9 Da    PI: 6.2245
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast04G112900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS280.84.1e-863547113374
                GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 
                         + L ++A+a ++g+ + a+++Larl+++  p g+p+ R a+y++eAL   la+      +   ++ ts+ +++ +l+a+k fs++sP+l+f
  Brast04G112900.1.p 354 DELAAAAKAAEAGNSTGAREILARLNHQLPPVGKPFFRSASYLKEALLLALAD-----GHHGGSRLTSPLDVALKLSAYKSFSDLSPLLQF 439
                         7899*************************************************.....55556677777779******************* PP

                GRAS  94 shltaNqaIleavege..ervHiiDfdisqGlQWpaLlqaLasRp....egppslRiTgvgspesgskeeleetgerLakfAeelgvpfef 178
                         +++ta qa+l++++ +  +++H+iDfd++ G+QW+++lq+La R+       p l++T+++s++s++  el+ t+++L++fA+ lg+pfef
  Brast04G112900.1.p 440 ANFTATQALLDEIACSaaSCIHVIDFDLGVGGQWASFLQELAHRRgaggVALPLLKLTAFVSAASHHPLELHLTQDNLSQFAADLGIPFEF 530
                         ***********988776699************************966444499************************************** PP

                GRAS 179 nvlvakrledleleeLrvkp.gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalf 268
                         n++   +++++++ eL   + +E +aV+l +          +     + +L+lvk+l Pk+vv ++  ad+ + +F ++fl++++ ++ l+
  Brast04G112900.1.p 531 NAV---SIDAFSPAELISPTgDEIVAVSLPVGCSARA---PP----LPVILRLVKQLGPKIVVAMDYGADRADLPFSQHFLHCFQSCMFLL 611
                         **8...9999***999666689********9777665...44....556****************************************** PP

                GRAS 269 dsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslv 359
                         dsl+a  + +s+ + k+Er+l++++++++v  + ++      + + Wr+ + +aGF+pvpls+ a++qa++ll++v+++g++ve++   l+
  Brast04G112900.1.p 612 DSLDAA-GIDSDSACKIERFLVQPRVEDAVLGRRKA-----DKSMAWRNVFAAAGFTPVPLSNLAEAQADCLLKRVQVRGFHVEKRGVGLT 696
                         ***988.89*********************988877.....78899********************************************* PP

                GRAS 360 lgWkdrpLvsvSaWr 374
                         l W++ +LvsvSaWr
  Brast04G112900.1.p 697 LFWQRGELVSVSAWR 711
                         **************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098542.812326691IPR005202Transcription factor GRAS
PfamPF035141.4E-83354711IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0048768Biological Processroot hair cell tip growth
GO:0051301Biological Processcell division
Sequence ? help Back to Top
Protein Sequence    Length: 713 aa     Download sequence    Send to blast
MRAALLGAER NGGAEHLAGR GSGKDLFWPA GGLEPRSVLD CSRRLSPPNS TSTLSSSLGG  60
GAADSTGVAA VSENSAGDAE ATKWGAPGDH GGGGGGCELP PIPGALDVGL VGGEGWDAML  120
GNAAAAAGQD QTFLNWIMGA AGDLELPVPP LPMHQQPLVD NAGFGFSAVD PLGFSLDHHL  180
GGVSSDLSSS GAMSHTTTGG GGGGSGGGSK ASSAAAFGLF SPEAASLQPP PPPMLFHEGI  240
DTKPPLLASQ PPGLLNQYQH QPPPPAAAFF MPLSSFPDHN QRSQLHQPPP KRHHSVPDDL  300
YLTRNQLGTS AAGQGLAFSP LHGSVPFQLQ PSPTPLRGPM KTTAAEAAQQ LLLDELAAAA  360
KAAEAGNSTG AREILARLNH QLPPVGKPFF RSASYLKEAL LLALADGHHG GSRLTSPLDV  420
ALKLSAYKSF SDLSPLLQFA NFTATQALLD EIACSAASCI HVIDFDLGVG GQWASFLQEL  480
AHRRGAGGVA LPLLKLTAFV SAASHHPLEL HLTQDNLSQF AADLGIPFEF NAVSIDAFSP  540
AELISPTGDE IVAVSLPVGC SARAPPLPVI LRLVKQLGPK IVVAMDYGAD RADLPFSQHF  600
LHCFQSCMFL LDSLDAAGID SDSACKIERF LVQPRVEDAV LGRRKADKSM AWRNVFAAAG  660
FTPVPLSNLA EAQADCLLKR VQVRGFHVEK RGVGLTLFWQ RGELVSVSAW RC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A6e-273527114375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1197208TGGGGGGSGGGS
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast04G112900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3719460.0AK371946.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2143M04.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003570043.10.0scarecrow-like protein 27
TrEMBLI1ICC30.0I1ICC3_BRADI; Uncharacterized protein
STRINGBRADI3G50930.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20203796
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.16e-91GRAS family protein