PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast04G111600.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C2H2
Protein Properties Length: 593aa    MW: 62411.8 Da    PI: 9.0276
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast04G111600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.62.1e-0583105123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         ++C+ C+k F r  nL+ H r H
  Brast04G111600.1.p  83 FVCEVCSKGFQREQNLQLHRRGH 105
                         89*******************88 PP
2zf-C2H211.60.00087160182123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         +kC +C+k++  +s+ k H + +
  Brast04G111600.1.p 160 WKCDKCSKRYAVQSDWKAHSKIC 182
                         58*****************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.16E-782105No hitNo description
Gene3DG3DSA:3.30.160.603.0E-582105IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.03283105IPR007087Zinc finger, C2H2
SMARTSM003550.008683105IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028085105IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.0E-4148181IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.16E-7155180No hitNo description
SMARTSM00355140160180IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 593 aa     Download sequence    Send to blast
MASNSSAAAV AAMFGIRDGD HQDQIKPLLA QQHRQQPLMA LTAGPDQATA TVPPAVKKKR  60
NLPDPDAEVI ALSPKTLMAT NRFVCEVCSK GFQREQNLQL HRRGHNLPWK LKQKDPNQVQ  120
RRRVYLCPEP TCVHHEPARA LGDLTGIKKH FCRKHGEKKW KCDKCSKRYA VQSDWKAHSK  180
ICGTREYRCD CGTLFSRRDS FITHRAFCDA LAQESARLPP SAQLYGGGAA NMALSLSQQA  240
HGQYDQAASP DLLRFGNGIS ARLDHLLSSS PGGGASAFRH QLPPPPSALF HLGSSSARQH  300
DQLFGDGSGN PHGAFLHLQG KPFHSLMQLP DLQGNGSTAT ASAPPPGIFN LGYIANSSAN  360
SSGTSSHGHA SQGHVANNDQ ISEGAGGGGG AGSESSGAVY FNAGGGSFSA AGDHQVVATA  420
AGMYNEQRQQ QAVMLPQMSA TALLQKAAQM GSSNGGASVF SGFMGSSVQA QQQQGRGPMV  480
DQAGQMHLQS LMNSLAGGGS GMFGGANGNN GRCMIDPRLY EMEHEVKFTS QAGNNGSGGD  540
VTRDFLGVGA AGVDMRGMSV AARGEHHGGG GMSFLETEMK SASSPFNGAR MQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C2e-34156218365Zinc finger protein JACKDAW
5b3h_F2e-34156218365Zinc finger protein JACKDAW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast04G111600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3564730.0AK356473.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1035D12.
GenBankAK3591320.0AK359132.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1090F15.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003570050.10.0protein indeterminate-domain 12
TrEMBLI1ICE50.0I1ICE5_BRADI; Uncharacterized protein
STRINGBRADI3G51090.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP17333798
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03840.11e-105C2H2 family protein