PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast04G103000.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family B3
Protein Properties Length: 427aa    MW: 45210.5 Da    PI: 10.0381
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast04G103000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B396.51.7e-3088189198
                         EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                         f+kv tpsdv+k++rlv+pk++ae++    +  +e++  l++ed+ g+ W+++++y+++s++yv+tkGW++Fvk+++L++gD+v F++ + 
  Brast04G103000.1.p  88 FDKVVTPSDVGKLNRLVIPKQYAEKYfpldSAANEKGLLLSFEDSAGKPWRFRYSYWNSSQSYVMTKGWSRFVKEKRLDAGDTVSFSRARA 178
                         89***************************955556889*************************************************8877 PP

                         SEE..EEEEE- CS
                  B3  88 sefelvvkvfr 98 
                            +l++ + r
  Brast04G103000.1.p 179 AADRLFIDWKR 189
                         77778887766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.109.3E-4281192IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.31E-2985192IPR015300DNA-binding pseudobarrel domain
CDDcd100171.38E-2586175No hitNo description
SMARTSM010192.1E-2188191IPR003340B3 DNA binding domain
PfamPF023628.7E-2888190IPR003340B3 DNA binding domain
PROSITE profilePS5086314.77688191IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 427 aa     Download sequence    Send to blast
MEFTATSSSS RFSKGREAED AEQEEPSRRE IPFMTAAAAA ASSSAAASVS ASGGSSPPFR  60
SGDGGAGASG SGGGDADQAG AVEKEHMFDK VVTPSDVGKL NRLVIPKQYA EKYFPLDSAA  120
NEKGLLLSFE DSAGKPWRFR YSYWNSSQSY VMTKGWSRFV KEKRLDAGDT VSFSRARAAA  180
DRLFIDWKRR ADSHPLLRFP GRLSPLPMMP LASHYAPWAG VGGRGFFLPP SPPATLYEHR  240
LRQGLDFRGS MNPAMGLGRQ PQLLLFGSAT SSRMVPPHAP PLLLPRAPPL HHYALQQSIA  300
AAAPLLPTAG SSSVVLDSVP VDIESPTTTA ATKKRVRLFG VNLDNDPHSS AGNGGGGESS  360
SNHGSRALSS SSLQMPASAW RPRDPTLRLL EFPSHGAESS PGQSSPSSSS SASKREARSS  420
ALDLDL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A1e-57831903113B3 domain-containing transcription factor NGA1
5os9_B1e-57831903113B3 domain-containing transcription factor NGA1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast04G103000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126101e-151CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
GenBankKJ8320751e-151KJ832075.1 Oryza sativa Indica Group cultivar Nagina 22 B3 transcription factor ngatha 3 (NGA3) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014755835.10.0B3 domain-containing protein Os02g0683500
SwissprotQ6EU301e-133Y2835_ORYSJ; B3 domain-containing protein Os02g0683500
TrEMBLA0A0Q3I4L90.0A0A0Q3I4L9_BRADI; Uncharacterized protein
STRINGOB02G35380.11e-146(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58337168
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46870.12e-58B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]