PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast04G101700.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family MYB_related
Protein Properties Length: 498aa    MW: 53409.6 Da    PI: 8.1814
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast04G101700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.27e-1761105147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         r +WT+eE++++++a +++G   W++I +++g ++t+ q++s+ qk+
  Brast04G101700.1.p  61 REKWTEEEHKRFLEALQLHGRA-WRRIQEHIG-TKTAVQIRSHAQKF 105
                         789*****************88.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466898.22E-1655111IPR009057Homeodomain-like
PROSITE profilePS5129420.2556110IPR017930Myb domain
TIGRFAMsTIGR015571.2E-1559108IPR006447Myb domain, plants
SMARTSM007174.3E-1360108IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.8E-961101IPR009057Homeodomain-like
PfamPF002491.1E-1461104IPR001005SANT/Myb domain
CDDcd001673.06E-1063106No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 498 aa     Download sequence    Send to blast
MASLQESAMV TDENTVAHRA AGGENAVNHH RKNHLNSDDM DLSGEDHVPK ARKPYTITKQ  60
REKWTEEEHK RFLEALQLHG RAWRRIQEHI GTKTAVQIRS HAQKFFSKVT KESSGSSGGS  120
GSVAAAAAIQ IPPPRPKRKP AHPYPRKADE GAPAASKHGV TGLTQLERPP PVRMQSMCEQ  180
EDGSPTSVLG GGFSNNSNGS RSPLPSAAGS DEHGNNVYGS SVDGCLSSSI ATDELGFQVP  240
KTKVSERISN GDVKEASYTG SETSVLKLFG KSVVLKDSCQ KPNTSTGTPH NSGDLGTEAS  300
AETATQRSRS VPSVGAAEGG SWNPWPSTMQ QFVYFVPQPS DGFTTQSAMP WFSYNGALPG  360
ALFYQQAVAP NQHQRHHSTA ADHKVTQREG SWTGSNTAPG SAAAHNSEAA DSRGRGNSSE  420
SNTTPLRRLT KCESSVSVSL QRGFVPYKRC AAESESPRSE APREETDGTF SEGLNTETPK  480
NWIGCPYLPS QIRHPDQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast04G101700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0094061e-128BT009406.1 Triticum aestivum clone wlm96.pk054.b21:fis, full insert mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003572833.20.0myb-like protein H
TrEMBLI1ICP90.0I1ICP9_BRADI; Uncharacterized protein
STRINGBRADI3G51960.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27223686
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17300.17e-35MYB_related family protein