PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast04G098700.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bHLH
Protein Properties Length: 355aa    MW: 37726.7 Da    PI: 7.0339
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast04G098700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.88e-13101152155
                         CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +r++h ++Er+RR+++N+ +  Lr+l+P +   + ++ + a+i+  A++++k+L+
  Brast04G098700.1.p 101 QRMTHIAVERNRRRQMNEYLVVLRSLMPDS---YVQRGDQASIVGGAIDFVKELE 152
                         79****************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000836.18E-1498156No hitNo description
PROSITE profilePS5088814.907100151IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.66E-17101170IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.5E-10101152IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.5E-14101169IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.1E-11106157IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MALALDALCA SSVDAALVYD TFNASSSSAA AAGFLLFDNA AAAAAFSDAA IAIADAGPAP  60
AQLESARPFA AGDDMPAPAP ARRKRRRRAR SCKSREESEC QRMTHIAVER NRRRQMNEYL  120
VVLRSLMPDS YVQRGDQASI VGGAIDFVKE LEQQLQSLEA QKRSLVHHNH KAARRDAMPM  180
RTAAESSASN CSSSSVTTED WHRASSPVAA ALGRPPFAGF FTYPQYVWCL PPQQQQAAGD  240
SSSGATMLSE ECGRAGVADV EVSLVETHAS VRVMAPRRPG QLLRMVAGLQ ALRLAVLHLN  300
VVSALDSLVL YSLSLKVEEG CGLTTADDIA AAVHHVLCFI HAEAASQQLV AAVQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18187RRKRRRR
28286RKRRR
38289RKRRRRAR
4101112RMTHIAVERNRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast04G098700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3575791e-111AK357579.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1057A06.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003572839.31e-160transcription factor bHLH96
TrEMBLI1ICS51e-159I1ICS5_BRADI; Uncharacterized protein
STRINGBRADI3G52150.11e-159(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37123678
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.11e-54bHLH family protein