PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast04G097000.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family MYB
Protein Properties Length: 319aa    MW: 34787.8 Da    PI: 5.0174
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast04G097000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.75.7e-181663148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        rg+WT++Ed +lv +++++G ++W++ +r  g+ R++k+c++rw +yl
  Brast04G097000.1.p 16 RGSWTPQEDMRLVAYIQKHGHPNWRALPRQAGLLRCGKSCRLRWINYL 63
                        89******************************99************97 PP
2Myb_DNA-binding50.54.8e-1669114148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         rg++T+eE+e  ++++ +lG++ W++Ia+ ++ gRt++++k+ w+++l
  Brast04G097000.1.p  69 RGNFTAEEEETVIKLHGLLGNK-WSKIAASLP-GRTDNEIKNVWNTHL 114
                         89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.1E-22766IPR009057Homeodomain-like
PROSITE profilePS5129414.8191163IPR017930Myb domain
SuperFamilySSF466892.88E-2913110IPR009057Homeodomain-like
SMARTSM007176.5E-131565IPR001005SANT/Myb domain
PfamPF002494.4E-151663IPR001005SANT/Myb domain
CDDcd001675.37E-101863No hitNo description
PROSITE profilePS5129425.62464118IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.3E-2567117IPR009057Homeodomain-like
SMARTSM007171.6E-1368116IPR001005SANT/Myb domain
PfamPF002491.6E-1469114IPR001005SANT/Myb domain
CDDcd001674.19E-1071114No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009809Biological Processlignin biosynthetic process
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MGRGRAPCCA KVGLNRGSWT PQEDMRLVAY IQKHGHPNWR ALPRQAGLLR CGKSCRLRWI  60
NYLRPDLRRG NFTAEEEETV IKLHGLLGNK WSKIAASLPG RTDNEIKNVW NTHLKKKASQ  120
KNKGHHQQEK PGAAKSNGGE AANGDSGPSS SSASSSTTSN VEQYCHTSNE PDMIGFSDML  180
LDALKDKEAA PMSMSSCSSS SSLTTTSARV EELLELPEID MDENIWSIID DDADVARLQS  240
DTTVPCAAIA AGQGEEEGKE WLEDLEKELG LWGPTEEFQA FVGPIDQIAY AGPLCEMEGD  300
PVCSYFQSRP TSPTFNSA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C4e-251411825128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that regulates positively genes involved in anthocyanin biosynthesis such as A1. {ECO:0000269|PubMed:7920701}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00144DAPTransfer from AT1G16490Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast04G097000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0701451e-116BT070145.1 Zea mays full-length cDNA clone ZM_BFc0138F01 mRNA, complete cds.
GenBankHF6794371e-116HF679437.1 Saccharum hybrid cultivar Co 86032 mRNA for ScMYB31 protein.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003572844.11e-152myb-related protein Zm1
SwissprotP200241e-116MYB1_MAIZE; Myb-related protein Zm1
TrEMBLI1ICT91e-151I1ICT9_BRADI; Uncharacterized protein
STRINGBRADI3G52260.11e-151(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21543798
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16490.17e-68myb domain protein 58
Publications ? help Back to Top
  1. Franken P,Schrell S,Peterson PA,Saedler H,Wienand U
    Molecular analysis of protein domain function encoded by the myb-homologous maize genes C1, Zm 1 and Zm 38.
    Plant J., 1994. 6(1): p. 21-30
    [PMID:7920701]