PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast04G096100.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family G2-like
Protein Properties Length: 359aa    MW: 38543.2 Da    PI: 8.3079
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast04G096100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like1023.8e-32181234255
             G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                         pr+rWt+ LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+
  Brast04G096100.1.p 181 PRMRWTTSLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRT 234
                         9****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.1E-29178234IPR009057Homeodomain-like
SuperFamilySSF466892.33E-15179235IPR009057Homeodomain-like
TIGRFAMsTIGR015571.5E-23181235IPR006447Myb domain, plants
PfamPF002491.9E-7182233IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MELFPSHPDL QLQLQISPPT KQPMDLGFWK RALDTTTPTT TPATISTSSP PIARTTTTTA  60
YPSAPSAGGG GGFHPAASTA QLPAGLQFLQ HTQPIIHEAQ ADLASTMRPI RGIPVYNTVS  120
PSSFPSFLQS QLHHHNLAHQ HQHCYVDAII GGAGAGPRSP GKLSGAGAAA LRPAKRGSRA  180
PRMRWTTSLH ARFVHAVELL GGHERATPKS VLELMDVKDL TLAHVKSHLQ MYRTIKTTDH  240
KTAATSYGQA KTIIEIADDS YFDITNTSGS ESSVQQSNLD GNELGSNMCA LWSNNSSRGA  300
WFQGKSREAN HGDIKSLEDV QSQSPDDDAS DLNSPPFRLS ELFVGAKKPN LDFTLGRM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A1e-16182236458Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B1e-16182236458Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A1e-16182236357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B1e-16182236357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C1e-16182236357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D1e-16182236357Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A1e-16182236458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C1e-16182236458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D1e-16182236458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F1e-16182236458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H1e-16182236458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J1e-16182236458Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast04G096100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0369117e-63BT036911.1 Zea mays full-length cDNA clone ZM_BFb0147F05 mRNA, complete cds.
GenBankKJ7268297e-63KJ726829.1 Zea mays clone pUT3369 G2-like transcription factor (GLK47) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010235845.10.0probable transcription factor KAN2 isoform X2
TrEMBLA0A2K2D4S50.0A0A2K2D4S5_BRADI; Uncharacterized protein
STRINGBRADI3G52320.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP94383445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17695.11e-43G2-like family protein