PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Brast04G091000.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | bHLH | ||||||||
Protein Properties | Length: 363aa MW: 38808.9 Da PI: 7.3551 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 28.2 | 3.4e-09 | 174 | 221 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR+ri +++ L+el+P + +k Ka +L + ++Y++sLq Brast04G091000.1.p 174 SHSLAERVRRERISERMRYLQELVPGC----DKVTGKAGMLDEIINYVQSLQ 221 8*************************9....555*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 4.49E-10 | 168 | 225 | No hit | No description |
SuperFamily | SSF47459 | 1.44E-16 | 168 | 236 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.7E-16 | 170 | 232 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.504 | 170 | 220 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.7E-6 | 174 | 221 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.2E-9 | 176 | 226 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006351 | Biological Process | transcription, DNA-templated | ||||
GO:0009637 | Biological Process | response to blue light | ||||
GO:0009911 | Biological Process | positive regulation of flower development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 363 aa Download sequence Send to blast |
MAHCGGGGGP PSRRPGAQLQ QETAVESLCQ GLMLDDVMLD DDRYRAICGA FGGYLQEWPD 60 LSSACFGAPP VQEVSNGGNS FSCSGSASSG GGGSTKRKPD AYVHSKGECK RPRGKQQLCE 120 LDQSAGRVKP EKPKPAGTRK KADVALHKQD PRAAGGQKTD YIHVRARRGQ ATDSHSLAER 180 VRRERISERM RYLQELVPGC DKVTGKAGML DEIINYVQSL QKQVEFLSMK IAASNPVVNF 240 DIVEDLFGGR RLGQACSPAA ATMPLPIHGQ MDTPCLQMQQ MHQPAAAGFG LEMVVNNQYT 300 LAQSRPLSAA TVSAGASVES CLDVNGAAAA WDIGSQSLFS GFDAQFQQIQ SDCLLDNLKM 360 EM* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Brast04G091000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK073952 | 1e-128 | AK073952.1 Oryza sativa Japonica Group cDNA clone:J033078L20, full insert sequence. | |||
GenBank | AK119183 | 1e-128 | AK119183.1 Oryza sativa Japonica Group cDNA clone:001-038-D03, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003570191.1 | 0.0 | transcription factor bHLH63 | ||||
TrEMBL | I1ID12 | 0.0 | I1ID12_BRADI; Uncharacterized protein | ||||
STRING | BRADI3G52790.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8252 | 37 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G34530.1 | 2e-39 | cryptochrome-interacting basic-helix-loop-helix 1 |
Link Out ? help Back to Top | |
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Phytozome | Brast04G091000.1.p |