PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast04G090500.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ZF-HD
Protein Properties Length: 414aa    MW: 44811.5 Da    PI: 6.8353
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast04G090500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer93.81.5e-29194250457
         ZF-HD_dimer   4 vrYkeClkNhAaslGghavDGCgEfmpsegee...gtaaalkCaACgCHRnFHRrev 57 
                         +rY+eCl+NhAa+lG+h++DGCgEfmps+      + aaal CaACgCHR+FHRre+
  Brast04G090500.1.p 194 WRYRECLRNHAARLGAHVLDGCGEFMPSSAPGegpAAAAALACAACGCHRSFHRREP 250
                         69*************************854332155699****************97 PP
2Homeobox14.27.9e-05317373153
                         TT--SS--HHHHHHHHHHHH....HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS
            Homeobox   1 rrkRttftkeqleeLeelFe....knrypsaeereeLAkklgLterqVkvWFqNrRa 53 
                         +r Rt+ft+eq +++ e+ +    + ++p+  +     +++g++ r+ kvW +N + 
  Brast04G090500.1.p 317 KRFRTKFTPEQKDRMLEFAHrvgwRVHKPDGGAVDAFCDQVGVSRRVLKVWMHNNKH 373
                         789*********88765444588779****************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047704.2E-27194250IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257744.0E-7195219IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.2E-25195249IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152324.905196249IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.607.1E-29307376IPR009057Homeodomain-like
SuperFamilySSF466891.43E-18308375IPR009057Homeodomain-like
TIGRFAMsTIGR015652.0E-24316372IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 414 aa     Download sequence    Send to blast
MEYKRSSHVE EEEDEMEEEE EEEEDDDEEE EEEEDEEEEM KGRHHHHHQH HYATAAPGGA  60
PPPPHQQQQQ QQLHAHGHVL VSSAAASPSS LLESAAFSRP LLPPNSSLVS SPPGFLSPHQ  120
QQQHPHRRRV ERERERTTVE STGEQHQQQQ RQRQQEPARN GVSGGGSGPM PPPAAPALAL  180
VAGGGAAAGE PLPWRYRECL RNHAARLGAH VLDGCGEFMP SSAPGEGPAA AAALACAACG  240
CHRSFHRREP LAAAASPSPS PASAVVSPSA TPRAAGAANP NSSRLMPLLL APPHMQQKRP  300
PAAAAGSASA PPAPGKKRFR TKFTPEQKDR MLEFAHRVGW RVHKPDGGAV DAFCDQVGVS  360
RRVLKVWMHN NKHLAKTSPS PSQPLLPLHH DPPAPPPHHH HHHPAQHQQQ HDA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A7e-203173781879ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast04G090500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3580053e-74AK358005.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv1066M24.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003572860.14e-95zinc-finger homeodomain protein 7
SwissprotQ8S3Q95e-75ZHD7_ORYSJ; Zinc-finger homeodomain protein 7
TrEMBLI1ID178e-94I1ID17_BRADI; Uncharacterized protein
STRINGBRADI3G52837.11e-94(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP134912329
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65410.13e-26homeobox protein 25