PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Brast04G076400.1.p

Organism

Brachypodium stacei

Taxonomic ID

1071399

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

bHLH

Protein Properties

Length: 338aa MW: 34628.5 Da PI: 5.1905

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Brast04G076400.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	37.5	4.2e-12	152	197	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+++Er RR+ri +++ L+el+P+a K +Ka++L + ++Y+k Lq Brast04G076400.1.p 152 HSIAERLRRERIAERMKALQELVPNA-----NKTDKASMLDEIIDYVKFLQ 197 99*********************8.....6****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	1.06E-13	145	201	No hit	No description
SuperFamily	SSF47459	3.53E-17	145	207	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	17.39	147	196	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.6E-16	149	206	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.0E-9	152	197	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.2E-13	153	202	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 338 aa Download sequence Send to blast
MQPAGHGGGG QDDFLDQMLS ALPPAWAELA SAKPPWELPS AGGEDDESAL LASRLRHHQI 60 SGGGGGNDEL RLGELRSHGL DGGGGGFLPL PLFADRSRDD FVAAGMHGGA ASAAVHAPFG 120 QAGSMPAPPP PTAAAPPRQR VRARRGQATD PHSIAERLRR ERIAERMKAL QELVPNANKT 180 DKASMLDEII DYVKFLQVQV KVLSMSRLGG AAAVAPLVAN MSSEDNGNGD GTSSSGWDGN 240 GGNSDDDGGG NTLRATEEQV ARLMEEDMGA AMQYLQGKGL CLMPISLASL ISSATSPSPL 300 LPHRMGRATA GGGGVLHADG SPESPRSLVN GSTGGDS*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	156	161	RLRRER

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Brast04G076400.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By cold, UV, ethylene (ACC), flagellin, jasmonic acid (JA), and salicylic acid (SA) treatments. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003570296.1	0.0	transcription factor bHLH82
Swissprot	Q9ZUG9	4e-71	BH066_ARATH; Transcription factor bHLH66
TrEMBL	I1IDG0	0.0	I1IDG0_BRADI; Uncharacterized protein
STRING	BRADI3G54070.1	0.0	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1419	37	118

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58010.1	8e-37	LJRHL1-like 3

Link Out ? help Back to Top
Phytozome	Brast04G076400.1.p

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhang J, et al. Sperm cells are passive cargo of the pollen tube in plant fertilization. Nat Plants, 2017. 3: p. 17079 [PMID:28585562]