PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast04G069100.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bHLH
Protein Properties Length: 305aa    MW: 33410.8 Da    PI: 8.3748
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast04G069100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH51.12.4e-1666112455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          hn  E+rRR riN+++  L++l+P++      K +Ka++L  A+eY+k+Lq
  Brast04G069100.1.p  66 VHNLSEKRRRCRINEKMKALQSLVPNS-----SKTDKASMLDDAIEYLKQLQ 112
                         6*************************8.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.19E-2060128IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.5E-1960121IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.01262111IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.00E-1865116No hitNo description
PfamPF000105.1E-1466112IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.0E-1968117IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MMDGGMDQER FGFLMRHQQQ HQGFGTMAAL AAGAPCDSEE ALGSSESEPA GRPARARGKR  60
ARAAEVHNLS EKRRRCRINE KMKALQSLVP NSSKTDKASM LDDAIEYLKQ LQLQVQMLSI  120
RNGLYPPQVN LPVGAPEPPA APQRPATVNQ NSIEASNPLV SLLPMNQISG AQHSFVPPNH  180
DLRQQHEPFV LSGVPCTTTR GPRFPPGSSQ PGLESLQLTV SAEMILQENV MLEHRPSSTQ  240
HAVSVPGHNM SQETPVPRPD HPGGCSIWKR QSQEMMPKTT ESFLFMPHLH RFQSSDADRG  300
LRSG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast04G069100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3606563e-89AK360656.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1122L11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010235938.10.0transcription factor SPATULA isoform X3
TrEMBLI1IDN50.0I1IDN5_BRADI; Uncharacterized protein
STRINGBRADI3G54640.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP33363776
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36930.12e-29bHLH family protein