PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast04G066800.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family NAC
Protein Properties Length: 302aa    MW: 33457.3 Da    PI: 6.869
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast04G066800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM157.55.5e-49101501128
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkklelee...vikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 
                         lppGfrF P+deelv++yL++kv+++++ +     ++ +vd++ +ePw+Lp  +k +++ewyfFs rd+kyatg r+nratksgyWkatgk
  Brast04G066800.1.p  10 LPPGFRFYPSDEELVCHYLRNKVANERFAAGGpagTMVDVDLHVHEPWELPDVAKLSTNEWYFFSFRDRKYATGLRTNRATKSGYWKATGK 100
                         79*************************666333337***************87788999******************************** PP

                 NAM  89 dkevlsk..........kgelvglkktLvfykgrapkgektdWvmheyrl 128
                         d+ + +             + vg++ktLvfy+grap+g+kt Wvmhe+r+
  Brast04G066800.1.p 101 DRVIRNPrlaatasgarAASIVGMRKTLVFYRGRAPNGTKTCWVMHEFRI 150
                         ****99877766655444444***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.15E-587169IPR003441NAC domain
PROSITE profilePS5100556.210169IPR003441NAC domain
PfamPF023653.9E-2811150IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MGLRDIELTL PPGFRFYPSD EELVCHYLRN KVANERFAAG GPAGTMVDVD LHVHEPWELP  60
DVAKLSTNEW YFFSFRDRKY ATGLRTNRAT KSGYWKATGK DRVIRNPRLA ATASGARAAS  120
IVGMRKTLVF YRGRAPNGTK TCWVMHEFRI ENPHTPPKED WVLCRVFHKK RADTEYAMDS  180
EQEMAGKGWN YVSSSSSCHG LEHQSPPAAF PSLGAGDGHH YQLPSSHSHH HHAGVDAFAS  240
MPPLLSYDSI LDFSQHLDGS GGTGGEAAGS RDDGGDQCGG LLMDLGLQEE QHYNYNSLMQ  300
M*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A6e-4811704166NO APICAL MERISTEM PROTEIN
1ut4_B6e-4811704166NO APICAL MERISTEM PROTEIN
1ut7_A6e-4811704166NO APICAL MERISTEM PROTEIN
1ut7_B6e-4811704166NO APICAL MERISTEM PROTEIN
3swm_A7e-4811707169NAC domain-containing protein 19
3swm_B7e-4811707169NAC domain-containing protein 19
3swm_C7e-4811707169NAC domain-containing protein 19
3swm_D7e-4811707169NAC domain-containing protein 19
3swp_A7e-4811707169NAC domain-containing protein 19
3swp_B7e-4811707169NAC domain-containing protein 19
3swp_C7e-4811707169NAC domain-containing protein 19
3swp_D7e-4811707169NAC domain-containing protein 19
4dul_A6e-4811704166NAC domain-containing protein 19
4dul_B6e-4811704166NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in stress response (By similarity). Binds to DNA-specific sequences of CLPD1 and OAT promoters in vitro (PubMed:18813954). {ECO:0000250|UniProtKB:Q7F2L3, ECO:0000269|PubMed:18813954}.
UniProtTranscriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast04G066800.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin.
UniProtINDUCTION: Induced by salt and cold stresses. {ECO:0000269|PubMed:18813954}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3640021e-177AK364002.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2020L05.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003572924.10.0NAC domain-containing protein 92
SwissprotQ5CD174e-58NAC77_ORYSJ; NAC domain-containing protein 77
SwissprotQ84TE61e-58NAC22_ARATH; NAC domain-containing protein 21/22
TrEMBLI1IDQ30.0I1IDQ3_BRADI; Uncharacterized protein
STRINGBRADI3G54817.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP69738166
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28530.14e-78NAC domain containing protein 74
Publications ? help Back to Top
  1. Le Hénanff G, et al.
    Grapevine NAC1 transcription factor as a convergent node in developmental processes, abiotic stresses, and necrotrophic/biotrophic pathogen tolerance.
    J. Exp. Bot., 2013. 64(16): p. 4877-93
    [PMID:24043850]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Xiao D, et al.
    SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1275-91
    [PMID:26304848]
  4. Huo X,Wang C,Teng Y,Liu X
    Identification of miRNAs associated with dark-induced senescence in Arabidopsis.
    BMC Plant Biol., 2015. 15: p. 266
    [PMID:26530097]
  5. Chen X, et al.
    Auxin-Independent NAC Pathway Acts in Response to Explant-Specific Wounding and Promotes Root Tip Emergence during de Novo Root Organogenesis in Arabidopsis.
    Plant Physiol., 2016. 170(4): p. 2136-45
    [PMID:26850273]
  6. Liu C,Wang B,Li Z,Peng Z,Zhang J
    TsNAC1 Is a Key Transcription Factor in Abiotic Stress Resistance and Growth.
    Plant Physiol., 2018. 176(1): p. 742-756
    [PMID:29122985]