PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Brast04G055900.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | C2H2 | ||||||||
Protein Properties | Length: 186aa MW: 19954.8 Da PI: 4.8893 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 15.1 | 6.8e-05 | 45 | 67 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ykC+ C + F++ L H+++H Brast04G055900.1.p 45 YKCGFCRRGFPTAQALGGHMNVH 67 9********************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.4E-6 | 42 | 71 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 5.9E-4 | 43 | 69 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 9.91 | 45 | 72 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 47 | 67 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 186 aa Download sequence Send to blast |
MEELGREISK VGRRPPTGRE EEEEDKQRLL HDEDDEDDEG RRQPYKCGFC RRGFPTAQAL 60 GGHMNVHRRK EYRPGPRPAG SGGVICSYGE PPPAVEKTLA GGGHQQQPAC STPAAGGSSM 120 LFNGVERAPR ALRLFGHEIV DSGAAAGRGQ CYDGRNGDDD DHGGQGDVEE GELDLELRLG 180 AAGQY* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Brast04G055900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010236875.1 | 3e-77 | transcriptional regulator SUPERMAN | ||||
TrEMBL | I1IE23 | 7e-76 | I1IE23_BRADI; Uncharacterized protein | ||||
STRING | BRADI3G55760.1 | 1e-76 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP14547 | 22 | 24 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G53820.1 | 3e-10 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Brast04G055900.1.p |