PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Brast04G053900.1.p

Organism

Brachypodium stacei

Taxonomic ID

1071399

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

C2H2

Protein Properties

Length: 306aa MW: 31362.5 Da PI: 9.0651

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Brast04G053900.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.3	0.0005	73	95	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+k+F++ L H +H Brast04G053900.1.p 73 YECKTCNKCFPTFQALGGHRASH 95 99**********99999998887 PP
2	zf-C2H2	11.9	0.00068	196	218	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg F + L H+r+H Brast04G053900.1.p 196 HECSICGAEFASGQALGGHMRRH 218 78********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.97E-9	72	95	No hit	No description
Pfam	PF13912	1.7E-11	72	97	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.094	73	95	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.097	73	100	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	75	95	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	1.97E-9	191	218	No hit	No description
Pfam	PF13912	1.3E-12	195	219	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.016	196	218	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.284	196	227	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	198	218	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 306 aa Download sequence Send to blast
MAHCLILLAQ SAAPDRSDSA RPQAAAPPRE SSPPAPAAAP APAAVTKAER YTSRKYTEAA 60 TTADGVRAGF YVYECKTCNK CFPTFQALGG HRASHKKPRL APSASPAGAE EDNVLNAINA 120 VATKPPPPST TMKTASPPPP PMTTTTTTTP PDQGPDVTTV LSLSSNNNNN GGVAMIGISM 180 SSSSNRTTTT TTTRVHECSI CGAEFASGQA LGGHMRRHRP LHHAPAPAPE RAVTAITAPT 240 SKKEAAMGGI NLVELDLNLP APASDEDSAL PAAPPVVLGL GPFDSGKKRL MLTAASSRGL 300 PLLIN*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Brast04G053900.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP003989	4e-64	AP003989.4 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1063_D06.
GenBank	AP004026	4e-64	AP004026.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1136_C04.
GenBank	AP014958	4e-64	AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBank	CP012610	4e-64	CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010235994.1	1e-144	zinc finger protein ZAT5
TrEMBL	A0A453Q4Z9	2e-92	A0A453Q4Z9_AEGTS; Uncharacterized protein
STRING	BRADI3G55910.1	1e-143	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2013	32	85

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G04390.1	2e-19	C2H2 family protein

Link Out ? help Back to Top
Phytozome	Brast04G053900.1.p