PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast04G048900.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bHLH
Protein Properties Length: 408aa    MW: 44385.1 Da    PI: 8.6219
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast04G048900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH52.11.2e-16158207255
                         HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         r +h++ E+rRR +iN++++ LrellP++    ++K +Ka+ L +++eYI+ Lq
  Brast04G048900.1.p 158 RSKHSATEQRRRTKINDRLDILRELLPNC----DQKRDKASFLLEVIEYIRLLQ 207
                         889*************************9....9*****************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.65E-14154211No hitNo description
SuperFamilySSF474594.06E-18154216IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.7E-20155217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.123156206IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.7E-14158207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.5E-10162212IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 408 aa     Download sequence    Send to blast
MELFQGEEPA HDFLSLRAGG SSPFQHRLQS AQRAGYGLGP HSLVKPAEPV KQPSSHGGAA  60
GDGAVSAAAD LGEQVLPGGV GTFSIRQVPD AQPREEAGMG RDASVHHGSS MEIAHEARSG  120
PMVRSAPSTM WQDSGVDKRS RAARSSGSSA DQEPSSPRSK HSATEQRRRT KINDRLDILR  180
ELLPNCDQKR DKASFLLEVI EYIRLLQEKC QKYESAIPEK NHTDSKSMAW DKVYCRSRWR  240
NTQNISQGQG GGLSATTEEM NKEQHNSPKG ITAAPASLFS TQSVKETSTT ASSSHNITEN  300
STPNNQLSWL SMSTMNKNSD VSNSKLSKQE TPSLHNDTES LSSAYSQGLL HKLKEALQKS  360
GVDPSQANIS VEINMDKRAR ANAHIHDNTK ANEGKEPMHI TKRLRCD*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast04G048900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010236005.20.0transcription factor BIM2 isoform X3
TrEMBLA0A0Q3QIL10.0A0A0Q3QIL1_BRADI; Uncharacterized protein
STRINGBRADI3G56340.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP76237128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08130.33e-38bHLH family protein