PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Brast04G048300.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | NF-YB | ||||||||
Protein Properties | Length: 250aa MW: 26678.5 Da PI: 6.7214 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 166.2 | 4.1e-52 | 36 | 131 | 2 | 97 |
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyre 92 reqdr++Pianv+rim++vlP +akis+daket+qecvse+isf+t+ea+++cqre+rkti+++d+lwa++ lGf+dyv+pl +yl+++r+ Brast04G048300.1.p 36 REQDRLMPIANVIRIMRRVLPPHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTITAEDVLWAMSRLGFDDYVQPLALYLHRFRD 126 89***************************************************************************************** PP NF-YB 93 legek 97 +ege Brast04G048300.1.p 127 FEGEA 131 **985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 1.3E-47 | 34 | 134 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 3.26E-37 | 38 | 147 | IPR009072 | Histone-fold |
Pfam | PF00808 | 2.9E-25 | 42 | 105 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
PRINTS | PR00615 | 1.5E-15 | 69 | 87 | No hit | No description |
PROSITE pattern | PS00685 | 0 | 72 | 88 | IPR003956 | Transcription factor, NFYB/HAP3, conserved site |
PRINTS | PR00615 | 1.5E-15 | 88 | 106 | No hit | No description |
PRINTS | PR00615 | 1.5E-15 | 107 | 125 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009738 | Biological Process | abscisic acid-activated signaling pathway | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0033613 | Molecular Function | activating transcription factor binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 250 aa Download sequence Send to blast |
MEMQGFAAAG TAANGGAHQG AAAATTNGGG NAPAIREQDR LMPIANVIRI MRRVLPPHAK 60 ISDDAKETIQ ECVSEYISFI TGEANERCQR EQRKTITAED VLWAMSRLGF DDYVQPLALY 120 LHRFRDFEGE ARGGLGSRGG APPGSSSSSS MGPHQHHHHH DMQMHAMYGN PAAMPPPHHH 180 AFLMPPQPYH AQYGQQYEVY GGGEHGMGAA AAYYGGAYAP GNNGDGGNGG ASTPPQAVNF 240 EHQQPFGYK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_A | 6e-60 | 30 | 126 | 1 | 97 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Brast04G048300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB288036 | 1e-131 | AB288036.1 Oryza sativa Japonica Group OsHAP3E mRNA for HAP3 subunit of HAP complex, complete cds. | |||
GenBank | AK107861 | 1e-131 | AK107861.1 Oryza sativa Japonica Group cDNA clone:002-134-B07, full insert sequence. | |||
GenBank | AP004179 | 1e-131 | AP004179.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1124_G07. | |||
GenBank | AP014958 | 1e-131 | AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence. | |||
GenBank | AY062184 | 1e-131 | AY062184.1 Oryza sativa (indica cultivar-group) HAP3 transcriptional-activator (LEC1B) mRNA, complete cds. | |||
GenBank | AY062185 | 1e-131 | AY062185.1 Oryza sativa (indica cultivar-group) HAP3 transcriptional-activator (LEC1B) gene, complete cds. | |||
GenBank | AY264284 | 1e-131 | AY264284.1 Oryza sativa (indica cultivar-group) leafy cotyledon 1 gene, complete cds. | |||
GenBank | CP012610 | 1e-131 | CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003570473.1 | 2e-91 | nuclear transcription factor Y subunit B-3 | ||||
TrEMBL | I1IEB5 | 5e-90 | I1IEB5_BRADI; Uncharacterized protein | ||||
STRING | BRADI3G56400.1 | 8e-91 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP201 | 38 | 331 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G47670.2 | 1e-60 | nuclear factor Y, subunit B6 |
Link Out ? help Back to Top | |
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Phytozome | Brast04G048300.1.p |