PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Brast04G047300.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | CO-like | ||||||||
Protein Properties | Length: 394aa MW: 43192.2 Da PI: 5.6435 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 20.9 | 7.7e-07 | 4 | 35 | 5 | 36 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg 36 C+ ++e++ +++C+++ lC +C + H+ Brast04G047300.1.p 4 LCDFCGEQRPTIYCRSDAASLCLSCDRNVHSA 35 6***************************9954 PP | |||||||
2 | zf-B_box | 25.4 | 2.9e-08 | 47 | 89 | 5 | 41 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg.......Htvvp 41 C+++ ++++ C + ++ lC++C ++H g H++++ Brast04G047300.1.p 47 LCDRCASQPAAVRCLEENTSLCQNCDWNGH-GatslaagHKRRT 89 7*****************************.5588888898766 PP | |||||||
3 | CCT | 63.3 | 7.2e-22 | 336 | 379 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 R al+RYkeK+k+RkF+KkirY+sRKa+A+ R+RvKGrFvk+ Brast04G047300.1.p 336 RGSALTRYKEKKKRRKFDKKIRYASRKARADVRKRVKGRFVKAG 379 6789*************************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 9.855 | 1 | 47 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 2.3E-10 | 1 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 2.71E-6 | 4 | 35 | No hit | No description |
PROSITE profile | PS50119 | 9.271 | 43 | 90 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 4.4E-5 | 47 | 89 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.03E-5 | 47 | 90 | No hit | No description |
SMART | SM00336 | 0.071 | 48 | 90 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS51017 | 15.309 | 336 | 378 | IPR010402 | CCT domain |
Pfam | PF06203 | 1.4E-16 | 336 | 378 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 394 aa Download sequence Send to blast |
MGALCDFCGE QRPTIYCRSD AASLCLSCDR NVHSANALSR RHMRTLLCDR CASQPAAVRC 60 LEENTSLCQN CDWNGHGATS LAAGHKRRTI NCYSGCPSSE ELSRIWSFVM DIHTAADEPN 120 CEEGISMMSI NDSGVNNHYA AEQKGSMLDI ASTALTSYPP TGEKLKPLNS GDGMNLRPLA 180 THQPAGSVSV TPKVRCITDE NMFNDGSIYE DFCVDDADLT FENYEELFGT SHIQTEQLFD 240 DAGIDSYFET KEMPTAESKE ELKPMQPECS NVVSADSSLC IPSRHAISSI SPSFSGLTGE 300 SNAGDHQDCG VSPMLLMGEP PWLPPGSEGS FPSGSRGSAL TRYKEKKKRR KFDKKIRYAS 360 RKARADVRKR VKGRFVKAGE AYDYDPLSET RSY* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 345 | 349 | KKKRR |
2 | 345 | 350 | KKKRRK |
3 | 346 | 350 | KKRRK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Brast04G047300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003570474.1 | 0.0 | zinc finger protein CONSTANS-LIKE 9 | ||||
Swissprot | Q9LUA9 | 1e-119 | COL10_ARATH; Zinc finger protein CONSTANS-LIKE 10 | ||||
TrEMBL | I1IEC4 | 0.0 | I1IEC4_BRADI; Uncharacterized protein | ||||
STRING | BRADI3G56490.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2079 | 37 | 88 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48250.1 | 6e-92 | B-box type zinc finger protein with CCT domain |
Link Out ? help Back to Top | |
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Phytozome | Brast04G047300.1.p |
Publications ? help Back to Top | |||
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