PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast04G042300.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family CO-like
Protein Properties Length: 458aa    MW: 48864.4 Da    PI: 7.3181
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast04G042300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box27.46.8e-092162338
            zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38
                        +r C+ + + +++++C  ++ +lC++C ++ H+       H+
  Brast04G042300.1.p 21 ARACDGCMRRRARWYCAADDAFLCQSCDTSVHSAnplarrHE 62
                        578*****************************6567777776 PP
2CCT67.14.7e-23404447144
                 CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                         Rea+++RY+eKr+tR+F KkirYe+RK +Ae+RpR+KGrFvk++
  Brast04G042300.1.p 404 REARVSRYREKRRTRLFAKKIRYEVRKLNAEKRPRMKGRFVKRP 447
                         9*****************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003362.5E-111966IPR000315B-box-type zinc finger
PROSITE profilePS5011910.8651966IPR000315B-box-type zinc finger
PfamPF006431.5E-72263IPR000315B-box-type zinc finger
CDDcd000213.87E-102466No hitNo description
PROSITE profilePS5101715.993404446IPR010402CCT domain
PfamPF062035.3E-18404446IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 458 aa     Download sequence    Send to blast
MSSSERKQAG GGGAAVGGKA ARACDGCMRR RARWYCAADD AFLCQSCDTS VHSANPLARR  60
HERLRLRGAS SPSPVPAEGG VPPESTTTKP TKRLQGGVAW AKRKARTRRP PVKSVGQLLS  120
RRLVPLVPDQ YQPGSGDQSS DEQRTSAADA AEEEEQQLLY RVPVFDPALG EFCSPPPMAP  180
VDDYYAMASS GCCRADAMAS NGNNGFVAEE QDTDKLAAAA RTSSSSPVQE LPDCFASFGP  240
TDAELREFAA DMEALLGGGG GGSEQQQLMT TMAEDSFYME ALGLVSPLSS ADVDGAGRAV  300
KVESRGSPPT LVDDDGDDGS FEHKAASVNG DDAGFLKRSL DLRLDYEAVI EGWGSSPWTD  360
GRRPNGGQLD DLLLHDHFYS GVWTAALGGG GRAARAAADD GGWREARVSR YREKRRTRLF  420
AKKIRYEVRK LNAEKRPRMK GRFVKRPAGA APCAVVA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1414430RRTRLFAKKIRYEVRKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast04G042300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024316643.10.0zinc finger protein CONSTANS-LIKE 16
TrEMBLI1IEI80.0I1IEI8_BRADI; Uncharacterized protein
STRINGBRADI3G57000.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32833058
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25440.17e-55B-box type zinc finger protein with CCT domain