PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast04G040400.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family FAR1
Protein Properties Length: 446aa    MW: 51717.1 Da    PI: 8.6311
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast04G040400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR137.95.7e-12138224277
                FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.........tekerrtraetrtgCkaklkvkkek...dgkwe 77 
                          Y+ +A + GF +rk++skk   +g+i +   vC++ gk++ e+ +          +k+r+++ +trt+Cka+l ++ +    +gkw+
  Brast04G040400.1.p 138 HYRVFALRKGFGIRKEYSKKL-VDGRISRVMVVCTRAGKPRAETXEdekienitsIVKKRKRNRTTRTDCKAHLYLRCTVaefEGKWM 224
                         699*************99998.8999**************999988999****99899999*************99876544567775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.6E-10138224IPR004330FAR1 DNA binding domain
PROSITE profilePS509668.827365401IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 446 aa     Download sequence    Send to blast
QKIPPHPSIQ GTKWKMHREF RDGYIHNFRQ SSGDVICTLG LSRSSKRTIP DSILEEPLAA  60
KKKLQQDTPE VVNAGMRGHA SGASNTASVD LHTVTEPATP ETEQNDDDGV NTNAEAHSTP  120
QPPSXDTKFD SFDAAYEHYR VFALRKGFGI RKEYSKKLVD GRISRVMVVC TRAGKPRAET  180
XEDEKIENIT SIVKKRKRNR TTRTDCKAHL YLRCTVAEFE GKWMAMLQKY EMEANEHLQA  240
LWQNRACWVP AYYIHDFYPF LQSTQRSEGF NAVLKKYVNP QNSLTEFARQ YTAIQEKIMS  300
AENKEEAETA TKDQYLWGYH PVERQMRKIY THSLFLRFQY EHVGGNRYML TSLWGRVGKY  360
GERSFQVEAS KNEGIFICEC CKYDRDGMVC CHVMRVMMQI GVHRIPDRYI LKRWTWDEDA  420
DLIQPDARTQ SENKEMPEES KRIMR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast04G040400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010233003.10.0protein FAR1-RELATED SEQUENCE 9
TrEMBLA0A0Q3JXF81e-135A0A0Q3JXF8_BRADI; Uncharacterized protein
STRINGBRADI2G05890.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26391018
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.18e-28FAR1-related sequence 5