PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast04G038900.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family MYB_related
Protein Properties Length: 631aa    MW: 70445.7 Da    PI: 5.3952
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast04G038900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.33.5e-08513560347
                         SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
     Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                         +WT  E ++lvd+v+++G g W+ I r        Rt  ++k++w+++
  Brast04G038900.1.p 513 AWTLSEVLKLVDGVARFGVGKWSEIRRLAFasySYRTSVDLKDKWRNL 560
                         7***************************999**99***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.907506565IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.9E-12507564IPR009057Homeodomain-like
SMARTSM007172.0E-8510563IPR001005SANT/Myb domain
CDDcd116602.57E-18512562No hitNo description
SuperFamilySSF466891.01E-14512565IPR009057Homeodomain-like
PfamPF002491.1E-5513560IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 631 aa     Download sequence    Send to blast
MEVGAPQDSQ QNKNEENEFE ENGSSDPVVY QLVRVEGDGT LVPATEDEVL QFEHFVDEKV  60
DLPSIEDVGH VEDFFANDCM FLKPDLEEES GKLETTGKLQ TQKLDADLVE DRLKPLDDSL  120
NLPSKSTVVH DKQPEKLNTE QGYHNTVHLD NASTETTKST VLNDSCNAEK EKADACSRHV  180
NDSSTEPSVS GITSSVPDFS ILRGEVFLDT LTIRELQEAF RATFGRQTTV KDKLWLKRRI  240
TMGLTHSCDV PSSGCVIKDY IVVGKDSKEE LPTIEGMVKV EVEATSLARD QVLDHANERD  300
TPSSSYYQSE DQQRSSKRLK GISTDHDESL GTLQDEQGTA KRLRKPTKRY IEELSDIETC  360
DSTGKLCSPG KRPAHDEVLL RPRAPFQEVD SLTITYPTRK DTFGGFSVHV PYVSRMRRGR  420
PRRNFSSFLD DGPSVECTEV QMAVEMTLEK DGEQGNHVNQ AMEVPLMNNA EKNGEHVETA  480
DNKKVQTVEA NILFRADAKS KTKRSLKRKH HRAWTLSEVL KLVDGVARFG VGKWSEIRRL  540
AFASYSYRTS VDLKDKWRNL IRASQTQLHS EKDGSCLRKS NPSTIPIPPS ILLRVKELAE  600
MQPQVGGLAA PMQFSGQNSR AAQGKGSGFL *
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast04G038900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003570524.10.0uncharacterized protein LOC100846611 isoform X2
TrEMBLI1IEM20.0I1IEM2_BRADI; Uncharacterized protein
STRINGBRADI3G57300.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP69663341
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.11e-86TRF-like 6