PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast04G038400.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family FAR1
Protein Properties Length: 703aa    MW: 81846.1 Da    PI: 8.8069
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast04G038400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR179.37e-2525117191
                FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHel 89 
                         kfYn+YA e GFsvrks+ +  + n+ei+ r++vC +eg++ee++ k ++++rr+r+ tr+gC+akl++ + k +g+w v+++  eH+H+l
  Brast04G038400.1.p  25 KFYNSYALEKGFSVRKSYVEWDEANQEIILRKLVCCREGSHEEKHMKrQDRKRRPRNLTRVGCRAKLVIARVKeTGRWFVKDFIGEHTHPL 115
                         6****************************************9998886789999****************9999****************9 PP

                FAR1  90 ap 91 
                         ap
  Brast04G038400.1.p 116 AP 117
                         86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.2E-2325117IPR004330FAR1 DNA binding domain
PfamPF105516.0E-34238331IPR018289MULE transposase domain
PROSITE profilePS5096610.237516555IPR007527Zinc finger, SWIM-type
SMARTSM005750.0058530557IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 703 aa     Download sequence    Send to blast
MADESVDEYH KIVEKTFGSE DDGLKFYNSY ALEKGFSVRK SYVEWDEANQ EIILRKLVCC  60
REGSHEEKHM KRQDRKRRPR NLTRVGCRAK LVIARVKETG RWFVKDFIGE HTHPLAPRDL  120
ACLLRSHRRI SNEQKADIVE MEISGLRKHK IMDILVMPYG GYNEVGCTTR DIYNFCHLYK  180
QETVAAGDAQ RVIRHMMARQ ERDPNFCFKY LVDAYGHLKG LFWADSQSRL DYEVFGDVVV  240
FDSTYRTNKY NLPFVLFVGL NHHRSTVVFG CGIISHETSE SYEWMLQTFS AAMAQKHPIS  300
VITDGDLAMQ RAMRVIWPDT IHRLCVWHIQ QHIVRHLGDD LVKEEFRSFI YDRSPIEEPE  360
RKWIDFLERN KVTSEESWLH QMYQMRKLWC APYLVGHCFL GLSSNQRSVS LNSVMHTHID  420
GSMTLFKMLE HYERCLSTRR LNESILDIMA LQSVPFTEVD ASSLEKHAAL VFTPAVFALV  480
RWSTNAVSNC TMSEIVDADN LSTYVVAKKD RRDKKFQVQC EVKESSLDWI SCSCRKLECL  540
GTPCSHIIYV LGILQEDQLP KCCVPTRWTM SAKAAFPKTT KNNMYDYSVK RYRELRNLSH  600
AACFLASQSV EAYERLKLVL NVQADSKESS TGHKECMRYG PLLPQKAQLD SRDLEKVLDP  660
VHVQGRGAPK KRLKPRKRKR LKVKCGYCRQ EGHNRRKCSK WEE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17378DRKRRP
2671682RLKPRKRKRLKV
3674680PRKRKRL
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast04G038400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024314638.10.0protein FAR1-RELATED SEQUENCE 5
TrEMBLI1HMH80.0I1HMH8_BRADI; Uncharacterized protein
STRINGBRADI2G37795.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.12e-98FAR1-related sequence 5