PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast04G025900.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bHLH
Protein Properties Length: 302aa    MW: 32475.9 Da    PI: 9.7543
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast04G025900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.36.4e-14103154155
                         CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +rr+h ++Er+RR+++N+ ++ Lr+++P++   ++++ + a+i+  A++++k+L+
  Brast04G025900.1.p 103 QRRNHIAVERNRRRQMNDYLAVLRSVMPPS---YAQRGDQASIVAGAINFVKELE 154
                         79****************************...*******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.83E-17101175IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.49E-14101158No hitNo description
PROSITE profilePS5088815.523102153IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.2E-11103154IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.4E-14103166IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-9108159IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MALEAVVFPQ GHLGYCGTAT DKVTATTSSL GIVDDIDREC LLEEKKGGVL LQQREDHAGD  60
QALSVPATPA AGRGRASPSL AARRRRRRPR AAAKKNKEEA ESQRRNHIAV ERNRRRQMND  120
YLAVLRSVMP PSYAQRGDQA SIVAGAINFV KELEQLLQSL EAQKHRRHSH LLPAPPPPFS  180
GFFTFPQFSA SRGNGSGSGA PKGVADVEVA LAESHANVKL LAPRPGSGSG NSKQLLRMVL  240
AMRCLGLTVL HLSATAADHL VFYSFSLKME DGCRLSSAEE VAAAVHHMVA EDDDHRAATP  300
I*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18289RRRRRRPR
28494RRRRPRAAAKK
3104114RNHIAVERNRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast04G025900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0605126e-69BT060512.1 Zea mays full-length cDNA clone ZM_BFb0009D23 mRNA, complete cds.
GenBankEU9660026e-69EU966002.1 Zea mays clone 290696 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003573068.11e-139transcription factor bHLH96
SwissprotQ9C7T43e-58BH096_ARATH; Transcription factor bHLH96
TrEMBLI1IF031e-138I1IF03_BRADI; Uncharacterized protein
STRINGBRADI3G58360.11e-138(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP104622843
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.15e-40bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]