PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Brast04G016400.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | Nin-like | ||||||||
Protein Properties | Length: 242aa MW: 28510.7 Da PI: 5.7542 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 76.7 | 2.7e-24 | 124 | 171 | 5 | 52 |
RWP-RK 5 isledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 +++e ls++F pik+AA eL+v+lT LKr+CR++GI+RWPhRk++sl Brast04G016400.1.p 124 LTFELLSRHFCVPIKQAAAELKVGLTQLKRRCRELGIPRWPHRKMRSL 171 89********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 16.984 | 107 | 191 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 1.4E-21 | 124 | 171 | IPR003035 | RWP-RK domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 242 aa Download sequence Send to blast |
MLQLQPMEDF SFYEEEGCYF QDFKFHYDEE YFPDFSLEYL LEESPFFSIQ HRLCTSTTAA 60 TRSYFWQEEL GVLFQGDILS LWAALDEEAR CKSEKELEQN LGRDVVEKTL TSNGPQNLQE 120 KPLLTFELLS RHFCVPIKQA AAELKVGLTQ LKRRCRELGI PRWPHRKMRS LQTLIDNVQE 180 LGRGTGEEGG MTKIVVEMLQ QTKKLMEERP WDVELDHSTK MLRQKCFKKN YKRRRLMAFE 240 G* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 231 | 235 | KRRRL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Brast04G016400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014756209.2 | 1e-141 | protein RKD1 | ||||
TrEMBL | A0A2K2D5T2 | 1e-140 | A0A2K2D5T2_BRADI; Uncharacterized protein | ||||
STRING | BRADI3G59410.1 | 1e-133 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4590 | 33 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66990.1 | 5e-32 | RWP-RK domain-containing protein |
Link Out ? help Back to Top | |
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Phytozome | Brast04G016400.1.p |