PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Brast04G016300.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | Nin-like | ||||||||
Protein Properties | Length: 144aa MW: 16574.1 Da PI: 9.7699 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 72.4 | 5.9e-23 | 26 | 74 | 4 | 52 |
RWP-RK 4 eisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ++++e++s+yF +pik AA eL+++ T+LKr+CR++GI RW Rk+ks+ Brast04G016300.1.p 26 SLTFEQVSQYFGMPIKHAAEELKIGHTLLKRRCRELGILRWHGRKVKSM 74 79*********************************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 15.573 | 5 | 94 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 1.4E-18 | 26 | 73 | IPR003035 | RWP-RK domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 144 aa Download sequence Send to blast |
MGSQDESSMQ KTTENEGHLS SGSQPSLTFE QVSQYFGMPI KHAAEELKIG HTLLKRRCRE 60 LGILRWHGRK VKSMQTLIGY VQELGKDGPP ERSEKTQMAV QKLQQCKKLM EETLLQMNFM 120 WQVVYKEIFI RRREGLKSAE SEK* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Brast04G016300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014756080.1 | 5e-42 | protein RKD1 | ||||
TrEMBL | A0A2K2D5V5 | 1e-40 | A0A2K2D5V5_BRADI; Uncharacterized protein | ||||
STRING | BRADI3G59420.1 | 3e-41 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4590 | 33 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G74480.1 | 3e-22 | RWP-RK domain-containing protein |
Link Out ? help Back to Top | |
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Phytozome | Brast04G016300.1.p |