PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast04G008800.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ERF
Protein Properties Length: 197aa    MW: 20989.1 Da    PI: 5.2952
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast04G008800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.41.3e-162272155
                 AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                        ++ykGVr++k +g+Wv+eIr p++   r r++lg+++ +++Aa+a +aa  +l+g
  Brast04G008800.1.p 22 KKYKGVRRRK-WGKWVSEIRLPNS---RERVWLGSYDAPDKAARAFDAAFVCLRG 72
                        59*****998.**********933...5*********************999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.78E-262282No hitNo description
PROSITE profilePS5103221.722380IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.3E-292382IPR001471AP2/ERF domain
SuperFamilySSF541715.62E-202382IPR016177DNA-binding domain
PfamPF008471.6E-92371IPR001471AP2/ERF domain
SMARTSM003808.7E-332386IPR001471AP2/ERF domain
PRINTSPR003671.6E-82435IPR001471AP2/ERF domain
PRINTSPR003671.6E-84662IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MSEAAAGNGE GSSTSTGERG MKKYKGVRRR KWGKWVSEIR LPNSRERVWL GSYDAPDKAA  60
RAFDAAFVCL RGPNADLNFP DSPPPLTRRL HAVNPQEVQA AALSHANRRA GPSAVVSASD  120
ESSRPMATDD VAACEDDWRP PAMAPLYSPT GWPGCSGNAY DFLQPVPPPP FDDDAEDYQA  180
GSGHGAGASS LWSFDP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-1423801472Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12430KGVRRRK
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00151DAPTransfer from AT1G19210Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast04G008800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010236912.12e-77ethylene-responsive transcription factor ERF017
SwissprotQ84QC25e-35ERF17_ARATH; Ethylene-responsive transcription factor ERF017
TrEMBLA0A0Q3I8D35e-76A0A0Q3I8D3_BRADI; Uncharacterized protein
STRINGTraes_6DL_FA861D610.21e-56(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP86132144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19210.14e-26ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Li SJ, et al.
    The Citrus transcription factor, CitERF13, regulates citric acid accumulation via a protein-protein interaction with the vacuolar proton pump, CitVHA-c4.
    Sci Rep, 2016. 6: p. 20151
    [PMID:26837571]
  3. Yin XR, et al.
    Involvement of an ethylene response factor in chlorophyll degradation during citrus fruit degreening.
    Plant J., 2016. 86(5): p. 403-12
    [PMID:27037684]