PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Brast04G007700.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | ERF | ||||||||
Protein Properties | Length: 403aa MW: 44156.1 Da PI: 4.225 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.7 | 3.5e-19 | 108 | 157 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +++G+r+++ +g+W+AeIrdp+ k r++lg+f ++eeAa+a++a +++++g Brast04G007700.1.p 108 QFRGIRQRP-WGKWAAEIRDPN---KGVRVWLGTFNSPEEAARAYDAEARRIRG 157 69*******.**********93...25*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 3.59E-31 | 108 | 166 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 2.6E-31 | 108 | 166 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.9E-37 | 108 | 171 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.48E-21 | 108 | 166 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 23.024 | 108 | 165 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.5E-10 | 109 | 120 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 7.3E-12 | 109 | 157 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.5E-10 | 131 | 147 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 403 aa Download sequence Send to blast |
MCGGAILSDL KRPPAVSRRL TEGSLWPEKK KAWNWKGEDD FEADFGEFEV VPVDEDLEEE 60 EEAGDDEVVE IKPPPVKRAF SGDDLSTMTT AGFDSPAERS AKRKRKNQFR GIRQRPWGKW 120 AAEIRDPNKG VRVWLGTFNS PEEAARAYDA EARRIRGNKA KVNFPEEPRA SQKRRAGPAA 180 AKVPKSSVEQ KPNVKPAVNN LANTNASAYP SADFASKKPL VQPDNKPFVQ SGDLPIFQLD 240 DLPFVLPDDL PVVQPDDMPF VPAMNSAAPF GAPGMNLYSD QGSNSFGCSD LGWDCDTKTQ 300 DITSIAPIST IVEGVESAVV TGNTQDSVVP PVMETNTVDP TNVLETNTVD PTNGLADLEP 360 LLRFLMEEDA GESIDSFLNL DESQDVDGLW SFDDMLTSRD FY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 6e-19 | 107 | 165 | 1 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
5wx9_A | 7e-19 | 108 | 167 | 14 | 74 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional activator that may be involved in defense signaling pathway. Binds in vitro to the DNA sequence 5'-AGCCGCC-3' of the GCC-box element found in pathogenesis-related (PR) gene promoters. The transcriptional activation is enhanced in vitro by the presence of MPK12/BWMK1. {ECO:0000269|PubMed:12913152}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Brast04G007700.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FP100982 | 1e-155 | FP100982.1 Phyllostachys edulis cDNA clone: bphylf055p09, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010236158.1 | 0.0 | ethylene-responsive transcription factor 1 | ||||
Swissprot | Q6K7E6 | 1e-138 | ERF1_ORYSJ; Ethylene-responsive transcription factor 1 | ||||
TrEMBL | I1IFK4 | 0.0 | I1IFK4_BRADI; Uncharacterized protein | ||||
STRING | BRADI3G60120.3 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1039 | 38 | 134 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G53910.2 | 1e-34 | related to AP2 12 |
Link Out ? help Back to Top | |
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Phytozome | Brast04G007700.1.p |