PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Brast04G006100.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
|
||||||||
Family | TCP | ||||||||
Protein Properties | Length: 253aa MW: 25452.5 Da PI: 9.8951 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 126.2 | 3.5e-39 | 31 | 126 | 2 | 95 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec..eaesssssasnsssgka 90 +++k +++++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tg+++++as++ +++s +ss+++ +++a Brast04G006100.1.p 31 TVRKAPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGSGTTPASFStsSPSSLRSSSHSAAAAQA 121 689*************************************************************999998885444444444442222222 PP TCP 91 aksaa 95 a++++ Brast04G006100.1.p 122 AQAQP 126 22222 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51369 | 28.209 | 37 | 91 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 9.3E-34 | 37 | 123 | IPR005333 | Transcription factor, TCP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 253 aa Download sequence Send to blast |
MTTRPDGGGG AEGKQLVPVA AAANGNGGAL TVRKAPSKDR HSKVDGRGRR IRMPIICAAR 60 VFQLTRELGH KSDGQTIEWL LRQAEPSIIA ATGSGTTPAS FSTSSPSSLR SSSHSAAAAQ 120 AAQAQPLGAG GAHQHHFLPH AAPFILGKRV RGGEDDDDHG HANDQAAAAA VSMGPAPGFW 180 ALPARAADFG QLWSFAAAPE MMAAPAMAGE ASAARVGNYL PMGQGVNLIA SLGGPGPAAG 240 PPAGRAEEEA AR* |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00524 | DAP | Transfer from AT5G23280 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Brast04G006100.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK374835 | 1e-107 | AK374835.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3077J21. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010236169.2 | 1e-113 | transcription factor TCP7-like | ||||
Swissprot | Q9FMX2 | 1e-68 | TCP7_ARATH; Transcription factor TCP7 | ||||
TrEMBL | A0A2K2D604 | 1e-112 | A0A2K2D604_BRADI; Uncharacterized protein | ||||
STRING | OMERI02G35320.1 | 3e-82 | (Oryza meridionalis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1941 | 33 | 100 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G23280.1 | 2e-43 | TCP family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Brast04G006100.1.p |