PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast03G309300.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C2H2
Protein Properties Length: 501aa    MW: 53715.1 Da    PI: 7.4456
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast03G309300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H221.85e-07321341323
                         ETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
                         C+ Cgk F+r  nL+ H+r H
  Brast03G309300.1.p 321 CQVCGKGFKRDTNLRMHMRAH 341
                         *******************99 PP
2zf-C2H211.10.0013407430123
                         EEETTTT.EEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCg.ksFsrksnLkrHirtH 23 
                         y C+ Cg k+Fs  s+L++H + +
  Brast03G309300.1.p 407 YICNRCGlKHFSVLSDLRTHEKHC 430
                         89******************9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015711.593319346IPR007087Zinc finger, C2H2
SMARTSM003552319341IPR015880Zinc finger, C2H2-like
SuperFamilySSF576678.15E-6320341No hitNo description
Gene3DG3DSA:3.30.160.608.2E-6321344IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280321341IPR007087Zinc finger, C2H2
SMARTSM00355240369402IPR015880Zinc finger, C2H2-like
SuperFamilySSF576678.15E-6402427No hitNo description
SMARTSM0035530407432IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 501 aa     Download sequence    Send to blast
MEKAAKEKER SLSALMRVKL KKTVGKKATA RIARGRTQRL SSPTSSRSDA GVLLLLARSA  60
SGSRTGGAVA STTDMEKEAH DDSIEQEGKE ENNYEPSEED MPMDEEYSDD VMSEGDPSGL  120
SRGTDEVEQQ TEVPSPGPSG DAHCHMLLYN LMVLREKVQL LHPLVGLTVH GRGDVDPAVV  180
ADAGAIVQEI VTVSSSMMYA FQHLCGAAGA STTSTAITNV ALQAQDSIVA AAGFFARDNA  240
AGTASGAAGF SDHQLQAMED HEADMQQQHR DFYDDDGTIS KPVAAAAQQA AAAAGTGTST  300
TTTTIIELDA SELLAKYTDY CQVCGKGFKR DTNLRMHMRA HGDQYKSKAA LASPLSMPSS  360
SLASNSSKYS CPQEGCRRNM RHLRFTPLSS VICAKNHYKR SHCPKMYICN RCGLKHFSVL  420
SDLRTHEKHC GHRRWLCSCG TVFSRKDKLA GHVSRFTVGG HYPVTAAAGD QRKIDRSSST  480
SSHQLLGNST NNGGASFSIT *
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00522DAPTransfer from AT5G22890Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast03G309300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003571264.11e-141protein SENSITIVE TO PROTON RHIZOTOXICITY 2
TrEMBLI1I0181e-140I1I018_BRADI; Uncharacterized protein
STRINGBRADI3G12490.11e-140(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74413251
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22890.12e-71C2H2 family protein