PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast03G301900.3.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family MYB
Protein Properties Length: 265aa    MW: 29083.5 Da    PI: 5.6368
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast03G301900.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.42.4e-161461148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        rg+WT+eEd +lv  +  +G  +W+++++  g+ R++k+c++rw +yl
  Brast03G301900.3.p 14 RGPWTAEEDNKLVSFILTHGRCCWRAVPKLAGLLRCGKSCRLRWTNYL 61
                        89******************************99************97 PP
2Myb_DNA-binding55.99.7e-1869111347
                         SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                           T++E++l +d++++lG++ W++Ia++++ gRt++++k++w+++
  Brast03G301900.3.p  69 LLTADEEQLVIDLHAKLGNR-WSKIAAKLP-GRTDNEIKNHWNTH 111
                         569*****************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.6E-21563IPR009057Homeodomain-like
PROSITE profilePS5129414.555961IPR017930Myb domain
SuperFamilySSF466891.56E-2711108IPR009057Homeodomain-like
SMARTSM007178.6E-131363IPR001005SANT/Myb domain
PfamPF002497.9E-151461IPR001005SANT/Myb domain
CDDcd001671.74E-101661No hitNo description
PROSITE profilePS5129428.32762116IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.1E-2564117IPR009057Homeodomain-like
SMARTSM007175.7E-1666114IPR001005SANT/Myb domain
PfamPF002491.2E-1569111IPR001005SANT/Myb domain
CDDcd001672.30E-1371112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MGRQPCCDKQ GVKRGPWTAE EDNKLVSFIL THGRCCWRAV PKLAGLLRCG KSCRLRWTNY  60
LRPDLKRGLL TADEEQLVID LHAKLGNRWS KIAAKLPGRT DNEIKNHWNT HIKKKLIKMG  120
IDPATHQPLA NTKAASPIGT SSQSTSAKSS DTVNQLDSKG PHGEGVSRPT DSSEHSSRNT  180
SDDDQDLLAN LLLEEELPVD EPWLNFAGSN DDEFSGIIGQ LLCDGPTDWL LDYQDVGMGD  240
SSLIDQDFGS TDGAVVRSSE ESKF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-28141167108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtR2R3 MYB-type transcription factor controlling the production of volatile benzoides in flowers by regulating the shikimate pathway, namely by activation of the 5-enol-pyruvylshikimate-3-phosphate synthase gene. This scent, mostly produced in the evening and night by the petals, attracts the pollinators. Anthocyanins production is not controlled by ODO1 as color and scent are produced at different stages of development. {ECO:0000269|PubMed:15805488}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast03G301900.3.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Increases before the onset of volatile emission at the end of the light period, peaks at night and decreases when volatile emission declines early morning.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003574901.11e-174protein ODORANT1
SwissprotQ50EX66e-84ODO1_PETHY; Protein ODORANT1
TrEMBLI1I9B31e-173I1I9B3_BRADI; Uncharacterized protein
STRINGBRADI3G42430.11e-174(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G22680.18e-83myb domain protein 85
Publications ? help Back to Top
  1. Verdonk JC,Haring MA,van Tunen AJ,Schuurink RC
    ODORANT1 regulates fragrance biosynthesis in petunia flowers.
    Plant Cell, 2005. 17(5): p. 1612-24
    [PMID:15805488]