PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Brast03G301100.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | MYB | ||||||||
Protein Properties | Length: 207aa MW: 23520.2 Da PI: 10.6658 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51.6 | 2.2e-16 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT eEd++l v+ +G g+W++ +r g++R++k+c++rw +yl Brast03G301100.1.p 14 KGAWTREEDDRLSAHVRAHGEGRWRSLPRLAGLRRCGKSCRLRWTNYL 61 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 50.1 | 6.1e-16 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+++++Ed l + +++ lG++ W+ Ia++++ gRt++++k++w+++l Brast03G301100.1.p 67 RGAFSADEDALVAALHAALGNR-WAMIAARLP-GRTDNEIKNYWNTHL 112 89********************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.2E-23 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 16.631 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.28E-27 | 13 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.2E-12 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.3E-14 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.92E-9 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 25.186 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.2E-25 | 65 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.3E-15 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.9E-14 | 67 | 112 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.06E-6 | 87 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 207 aa Download sequence Send to blast |
MGRSPCCEKA HTTKGAWTRE EDDRLSAHVR AHGEGRWRSL PRLAGLRRCG KSCRLRWTNY 60 LRPDLKRGAF SADEDALVAA LHAALGNRWA MIAARLPGRT DNEIKNYWNT HLRKRLMGMG 120 IDPVTHRPVV VGDGEMMPVP ETERKKKAAP RCHGLNLELR ISPPWQQEEE SRPPVKKEET 180 TRQMLQGGDL LGLRAGMLEF RRIEMK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 1e-28 | 13 | 116 | 26 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that regulates negatively genes involved in anthocyanin biosynthesis. {ECO:0000269|PubMed:7920701}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Brast03G301100.1.p |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003574896.1 | 1e-108 | myb-related protein Zm38 | ||||
Swissprot | P20025 | 1e-83 | MYB38_MAIZE; Myb-related protein Zm38 | ||||
TrEMBL | I1I9A4 | 1e-107 | I1I9A4_BRADI; Uncharacterized protein | ||||
STRING | BRADI3G42350.1 | 1e-107 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP116 | 37 | 448 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G16720.1 | 4e-78 | myb domain protein 7 |
Link Out ? help Back to Top | |
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Phytozome | Brast03G301100.1.p |
Publications ? help Back to Top | |||
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