PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast03G297000.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bHLH
Protein Properties Length: 292aa    MW: 31231.7 Da    PI: 7.471
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast03G297000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH376.1e-12106153355
                         HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         ++h e+Er RR+r+N +f  Lr  +P+       +++ a+ L  Av YI++L+
  Brast03G297000.1.p 106 ASHVEAERLRRERLNRRFCDLRAAVPTV-----SRMDRASLLADAVSYISQLR 153
                         589************************6.....49****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.773103152IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.62E-15105170IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-9106152IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.7E-14107169IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.3E-10109158IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MDELVVFPAA VGSSPCSPPS AASFFSAASP RPRPPVIELV SCEVPEQWLA NDDYLDLDHL  60
GSNYELAVAA GGLPAMAATT EPFVPAVMKS KRGRKPGGPR SDGPTASHVE AERLRRERLN  120
RRFCDLRAAV PTVSRMDRAS LLADAVSYIS QLRGHVNRLE REAQAQAQQL VVAANAARIN  180
NQKAALAAPA VGEEEEEERL EVRMVGPEAA AAWLRLVTTA GTRHAPARLM AALRALDLPV  240
QHACVSRVHG CPPTVVQDVV VDVPPDAGMR DEARLRAALL RGLQLCRSQA N*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A3e-16107170871Transcription factor MYC2
5gnj_B3e-16107170871Transcription factor MYC2
5gnj_E3e-16107170871Transcription factor MYC2
5gnj_F3e-16107170871Transcription factor MYC2
5gnj_G3e-16107170871Transcription factor MYC2
5gnj_I3e-16107170871Transcription factor MYC2
5gnj_M3e-16107170871Transcription factor MYC2
5gnj_N3e-16107170871Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1112117RLRRER
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast03G297000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003572476.12e-78transcription factor bHLH14
TrEMBLI1I9635e-77I1I963_BRADI; Uncharacterized protein
STRINGBRADI3G41950.19e-78(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP89333130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17880.13e-08bHLH family protein