PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast03G292100.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family CO-like
Protein Properties Length: 493aa    MW: 53155 Da    PI: 5.9351
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast03G292100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box19.62e-06950237
            zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......H 37
                        +++ C+ ++e  + l+C+ +   lC  C  + H        H
  Brast03G292100.1.p  9 QQWPCDYCGEAAAALHCRADAARLCVACDRHVHAAnalsrkH 50
                        7899*******9******************999545555555 PP
2CCT63.47.1e-22439483145
                 CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqae 45 
                         R+ a++RY+eKrk+R++eK+irYesRK +A++R+RvKGrFvk++e
  Brast03G292100.1.p 439 RDSAMQRYREKRKNRRYEKHIRYESRKLRADTRKRVKGRFVKSNE 483
                         899***************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003362.3E-11855IPR000315B-box-type zinc finger
PROSITE profilePS501199.84855IPR000315B-box-type zinc finger
CDDcd000216.15E-91154No hitNo description
PfamPF062032.9E-16439481IPR010402CCT domain
PROSITE profilePS5101715.338439481IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 493 aa     Download sequence    Send to blast
MKDGGGGRQQ WPCDYCGEAA AALHCRADAA RLCVACDRHV HAANALSRKH VRAPLCAACA  60
ARPAAARLAS GPGPESFLCS GCEDEGGHEG AARVPVEGFS GCPAASELAA SWGLDLLLLP  120
ADAAAAGCGG GRGEQEEEDA LFFSSLDYSM LVDPEMRDLY VPCDPPDSGC GGRPLKGEAL  180
WQQLAEMARR EQETQSQPPQ EPQPQRQQQQ YTPDLSPRTP RRSSAGPEKQ PPPAPPEPAP  240
FPYTSLLMNM MPPDNLAGSN NHRLRDVDEA GQLQWEFTAP SSVPPTQIWD FNLGRSRNHN  300
ENSALEVEFG SNNGGFMIKS YNDMLKEISS GATKDLEDIY DSGYCAAAED IMSTNICQLS  360
SKNVSTASNK RKVSSCTSTI DGPTTSGNYV PTSGPLGSSS QDRGAALTRE ISFGEQTVVP  420
TGADRPTTRI DSETLAQNRD SAMQRYREKR KNRRYEKHIR YESRKLRADT RKRVKGRFVK  480
SNEALNASGN GG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast03G292100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3559710.0AK355971.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv1028G17.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003574843.20.0zinc finger protein CONSTANS-LIKE 14
TrEMBLA0A0Q3IEY20.0A0A0Q3IEY2_BRADI; Uncharacterized protein
STRINGBRADI3G41500.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45042026
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28050.17e-18B-box type zinc finger protein with CCT domain