PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Brast03G291700.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | NAC | ||||||||
Protein Properties | Length: 258aa MW: 27329.6 Da PI: 10.0734 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 92 | 1e-28 | 26 | 167 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 lppGfrF+Ptdeelv +yL++k+ g +l++ v++++ ++++++Pwd + a+e e yfF+ r +++a ++ + at++g Wk g+++ Brast03G291700.1.p 26 LPPGFRFRPTDEELVLQYLRRKALGAPLPA-AVVPDLpRLHSLDPWDVL-APGAGEGEKYFFALRPSAAAGKRAAAAATENGWWKPEGRER 114 79****************************.7899998*********96.455677899******9988755555559************* PP NAM 91 evlsk....kgelvglkktLvfy..........kgrapkge.......ktdWvmheyrl 128 +v++ +++lvg+k+ L+f + + + W mheyrl Brast03G291700.1.p 115 AVVAVcrsgRSHLVGVKRALTFVprarrgkrgsS------SsspapalTAGWAMHEYRL 167 **99888888889**********88775553331......12233444789******98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.71E-36 | 24 | 195 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 39.834 | 26 | 195 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.4E-19 | 27 | 167 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 258 aa Download sequence Send to blast |
MESSPVVLAR QPQGQGEGQA EVLRALPPGF RFRPTDEELV LQYLRRKALG APLPAAVVPD 60 LPRLHSLDPW DVLAPGAGEG EKYFFALRPS AAAGKRAAAA ATENGWWKPE GRERAVVAVC 120 RSGRSHLVGV KRALTFVPRA RRGKRGSSSS SPAPALTAGW AMHEYRLALP PHHKNGCYLA 180 QSGSEEWVVC RVFRRDTRPS SSSRRHTLAG HATMPMPASP STSSSSSSSS STSSCVTSGG 240 SGSSSSDDDD LQEEASS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 3e-24 | 25 | 197 | 16 | 167 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 3e-24 | 25 | 197 | 16 | 167 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 3e-24 | 25 | 197 | 16 | 167 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 3e-24 | 25 | 197 | 16 | 167 | NO APICAL MERISTEM PROTEIN |
3swm_A | 3e-24 | 25 | 197 | 19 | 170 | NAC domain-containing protein 19 |
3swm_B | 3e-24 | 25 | 197 | 19 | 170 | NAC domain-containing protein 19 |
3swm_C | 3e-24 | 25 | 197 | 19 | 170 | NAC domain-containing protein 19 |
3swm_D | 3e-24 | 25 | 197 | 19 | 170 | NAC domain-containing protein 19 |
3swp_A | 3e-24 | 25 | 197 | 19 | 170 | NAC domain-containing protein 19 |
3swp_B | 3e-24 | 25 | 197 | 19 | 170 | NAC domain-containing protein 19 |
3swp_C | 3e-24 | 25 | 197 | 19 | 170 | NAC domain-containing protein 19 |
3swp_D | 3e-24 | 25 | 197 | 19 | 170 | NAC domain-containing protein 19 |
4dul_A | 3e-24 | 25 | 197 | 16 | 167 | NAC domain-containing protein 19 |
4dul_B | 3e-24 | 25 | 197 | 16 | 167 | NAC domain-containing protein 19 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Brast03G291700.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010235343.1 | 1e-125 | NAC domain-containing protein 83 | ||||
TrEMBL | I1I8Z8 | 1e-124 | I1I8Z8_BRADI; Uncharacterized protein | ||||
STRING | BRADI3G41470.1 | 1e-125 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11818 | 31 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G04070.2 | 1e-22 | NAC domain containing protein 47 |
Link Out ? help Back to Top | |
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Phytozome | Brast03G291700.1.p |