PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Brast03G284900.1.p

Organism

Brachypodium stacei

Taxonomic ID

1071399

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

bHLH

Protein Properties

Length: 401aa MW: 42679.5 Da PI: 6.5197

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Brast03G284900.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	26.2	1.4e-08	199	246	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR+ri +++ L++l+P + +k Ka +L + ++Y++sLq Brast03G284900.1.p 199 SHSLAERVRRERISQRMKFLQDLVPGC----NKVIGKALMLDEIINYVQSLQ 246 8***********************9....677***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	3.79E-16	193	260	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.03E-9	193	250	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.9E-15	195	258	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	14.964	195	245	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	8.4E-6	199	246	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.3E-8	201	251	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 401 aa Download sequence Send to blast
MAGGGDYISS LLNSSPMLDF GVLDGVGAGA GGDCLEKFCG DPGFAERAAR LSSFNGQRFP 60 GAAEGLFGMP PPAPAASNGG GGGGSREASS VSDPASAMMK DPNAKKRKAP AAKGKAKEPS 120 LSTSGQVGDQ KELDAKRCKT GDAEKKMTAV KPKAEQARSD SSVEDYGEPK KGKGKNAKPV 180 EPPKDYVHVR ARRGQATDSH SLAERVRRER ISQRMKFLQD LVPGCNKVIG KALMLDEIIN 240 YVQSLQRQVE FLSMKLATVN PLDFSNLPTL LHKDMYQACG PSASSVFSLE SSNSAFPFSD 300 QGDVFQSFVP NSMESQCTLN QLDLALSHAT SAQYAFQDGT GSTNLQQQQR NFWEDDLQSV 360 FHVDNNHGQS QDNAAGSAQS FNVITGADES TQAGQMKMEF *

Sequence ? help Back to Top

Protein Sequence Length: 401 aa Download sequence Send to blast

MAGGGDYISS LLNSSPMLDF GVLDGVGAGA GGDCLEKFCG DPGFAERAAR LSSFNGQRFP  60
GAAEGLFGMP PPAPAASNGG GGGGSREASS VSDPASAMMK DPNAKKRKAP AAKGKAKEPS  120
LSTSGQVGDQ KELDAKRCKT GDAEKKMTAV KPKAEQARSD SSVEDYGEPK KGKGKNAKPV  180
EPPKDYVHVR ARRGQATDSH SLAERVRRER ISQRMKFLQD LVPGCNKVIG KALMLDEIIN  240
YVQSLQRQVE FLSMKLATVN PLDFSNLPTL LHKDMYQACG PSASSVFSLE SSNSAFPFSD  300
QGDVFQSFVP NSMESQCTLN QLDLALSHAT SAQYAFQDGT GSTNLQQQQR NFWEDDLQSV  360
FHVDNNHGQS QDNAAGSAQS FNVITGADES TQAGQMKMEF *

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Brast03G284900.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003574799.1	0.0	transcription factor bHLH78 isoform X1
TrEMBL	I1I8S6	0.0	I1I8S6_BRADI; Uncharacterized protein
STRING	BRADI3G40860.1	0.0	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP919	38	137

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07340.1	3e-55	bHLH family protein

Link Out ? help Back to Top
Phytozome	Brast03G284900.1.p