PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast03G275200.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family MYB_related
Protein Properties Length: 626aa    MW: 65898.2 Da    PI: 10.2412
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast03G275200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.31.5e-071847434
                        S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTT CS
     Myb_DNA-binding  4 WTteEdellvdavkqlGggtWktIartmgkg 34
                        W t E++ll++av+++Gg +W+++a+++   
  Brast03G275200.1.p 18 WGTLEELLLACAVNRHGGACWDKVAAELR-L 47
                        9999**********************998.3 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.00671472IPR001005SANT/Myb domain
CDDcd001670.001571848No hitNo description
PfamPF002492.6E-61867IPR001005SANT/Myb domain
SuperFamilySSF473702.22E-12248362IPR001487Bromodomain
SMARTSM002971.1E-4250366IPR001487Bromodomain
Gene3DG3DSA:1.20.920.101.9E-12253392IPR001487Bromodomain
PROSITE profilePS500149.67265347IPR001487Bromodomain
CDDcd043692.56E-10268361No hitNo description
PfamPF004396.7E-7269351IPR001487Bromodomain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 626 aa     Download sequence    Send to blast
MAAGSHDPDS PAAGGEIWGT LEELLLACAV NRHGGACWDK VAAELRLRVA ADAAARFTPE  60
GCRLRFRLIR RRFAAAAGDD DDDDDDGELA VAAAAESCVE ELRKLRMAEL RREVHRHDVS  120
IGALESKVKR LKEERERSLS PASEEEEAVN ESPEEAGGEN RVSGEVSDNS SDLKPLGTQD  180
SDPAAADGHP AVNDEPDAKE ENASGESAAA SKDAGAEKES SDVQSSASPS KRRLRKSGGG  240
EALSSSAPLP AAEVEPLVAF LESVRASKSG SVFKRRLESQ KGGKYRGTIR RHVDLEMIRS  300
KLESGGPKTT GKGGSSCFYT SASEFYRDLL LLCANALVFF PRGSTEHAAA ARTRALVSKR  360
ISRSLHGGAA EKASASASAA AAAAGGGSLT DGGKKPKPEA EAEGSLMEKS TPIMVSRKRS  420
SIAKAAANAA RKEEKVEKAD TDGEEEQDEE EDKKKRGSAR GRTLRSSKTR EPAAMNGSPI  480
GKRTRSKGSA AAAAAEASKK PDKKSGARGK AAAAAEGGVV KKRNAVDFLN RMKQSSSQST  540
ERVSLLETLK LSATEQKKPG RGEGRKDTGS SSSSRRSAAA SETPPSRGRR NVGRPPKRAA  600
APPSPPPPKR AKADERPATR RRGRK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast03G275200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003574754.10.0nuclear receptor corepressor 2
TrEMBLA0A2K2D2800.0A0A2K2D280_BRADI; Uncharacterized protein
STRINGBRADI3G40060.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31812648
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44430.12e-22DNA-binding bromodomain-containing protein