PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast03G272300.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C2H2
Protein Properties Length: 419aa    MW: 46112.5 Da    PI: 6.3805
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast03G272300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.64.5e-05243262120
                         EEETTTTEEESSHHHHHHHH CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                         ++Cp C k+F+r  n++ H+
  Brast03G272300.1.p 243 FSCPVCAKTFNRYNNMQMHM 262
                         89*****************9 PP
2zf-C2H212.50.00043329349323
                         ETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
                         C +Cgk F  k + ++H +++
  Brast03G272300.1.p 329 CRKCGKAFAVKGDWRTHEKNC 349
                         *****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.35E-5238265No hitNo description
SMARTSM003550.14243265IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.606.0E-6243262IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.159243270IPR007087Zinc finger, C2H2
PROSITE patternPS000280245265IPR007087Zinc finger, C2H2
SMARTSM00355220290322IPR015880Zinc finger, C2H2-like
SuperFamilySSF576672.79E-6309347No hitNo description
Gene3DG3DSA:3.30.160.603.0E-5314347IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035582327347IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.621327347IPR007087Zinc finger, C2H2
SMARTSM00355220353376IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009860Biological Processpollen tube growth
GO:0010500Biological Processtransmitting tissue development
GO:1990058Biological Processfruit replum development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 419 aa     Download sequence    Send to blast
MEDPYASFLK NPYYYYCTSS FPTTAPPAHP FPPYAAPLYP ASMAAAAPVH HHHQYPSFFH  60
QQPPPEQPNH YHYSNTATSM APPSPPLREA LPLLSLSPTP ASARRRHEDL DCSDSENDGC  120
CGYTRQDHAP TRAPLCADLN CVPSCCDGEG DPMDVEESAA VALRIGLPAA EADLLSALSS  180
GGAEAEAELM EEEDEEEDEF KGQEEAAVGY FSSWAAGAPV GRLNKGQYWI PTPTQILMGP  240
TQFSCPVCAK TFNRYNNMQM HMWGHGSQYR KGPESLRGIQ PTAMLRLPCY CCAQGCRNNI  300
DHPRAKPLKD FRTLQTHYKR KHGLKPFLCR KCGKAFAVKG DWRTHEKNCG RLWYCLCGSE  360
FKHKRSLKDH ARAFGHGHGA AFGCGGNNAD ADADGFFDED DEGAVSEIEH DGGRPSLR*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269|PubMed:17600712, ECO:0000269|PubMed:23515580, ECO:0000269|PubMed:25039392}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast03G272300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3568141e-173AK356814.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1040D10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003572359.10.0zinc finger protein WIP2
SwissprotQ9SVY11e-113ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBLA0A0Q3JKN70.0A0A0Q3JKN7_BRADI; Uncharacterized protein
STRINGBRADI3G39820.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58638170
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.11e-102C2H2 family protein
Publications ? help Back to Top
  1. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]
  2. Boex-Fontvieille E, et al.
    An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence.
    Front Plant Sci, 2016. 7: p. 1246
    [PMID:27625656]