PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast03G263100.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bHLH
Protein Properties Length: 488aa    MW: 52414.2 Da    PI: 7.0477
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast03G263100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH55.21.3e-17201250255
                         HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         r +h++ E+rRR++iN++f+ Lre+lP++    ++K +Ka+ L +++eYI+ Lq
  Brast03G263100.1.p 201 RSKHSATEQRRRSKINDRFQLLREILPHN----DQKRDKASFLLEVIEYIRFLQ 250
                         889*************************9....9*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.107.2E-22198267IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.53E-18199272IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.628199249IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.90E-16201254No hitNo description
PfamPF000105.1E-15201250IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.6E-13205255IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 488 aa     Download sequence    Send to blast
MGLQGNKATH DFLSLCTAAG KDSSLPQLPG SNSKPPPSPP AQGFFLRTHD FLQPLERPSP  60
QSPPPSHPAD DNNNNKALPA SVGTFTISHA APVVKQEPPF ALWGAAAADP RGHQWTLPFG  120
AARAVASSRP HQQSERKGGA GCGFMDAGSG SSAGAGFDDE DGLAARREVS SSLKELTVRV  180
EAKGGSCSGS AGTDQLPNTP RSKHSATEQR RRSKINDRFQ LLREILPHND QKRDKASFLL  240
EVIEYIRFLQ EKVQKYEVSY PEGNQENGKV VPWANMYFRS FWKNSQNKDQ IPGDVSPDPS  300
QIIKNGSSPD FPFIVKPDDN DNRVASVGPL GALDPAETDP LGRMSLKTTE TPSPLNVPDI  360
VATLPQAHQT RSSPADGSAM IKELLHNPEL AIDEGTISLS SQYSQELLNT LNHALQSSGI  420
DLSQASISVQ INLGKRATKT SDPAANSAST ELIDPAANIQ TMDHQLRFGG GAQEHRRATK  480
RHKSDNT*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00219DAPTransfer from AT1G69010Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast03G263100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003574682.10.0transcription factor BIM2 isoform X1
TrEMBLI1I8450.0I1I845_BRADI; Uncharacterized protein
STRINGBRADI3G38970.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP76237128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69010.11e-53BES1-interacting Myc-like protein 2