PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast03G262200.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bHLH
Protein Properties Length: 313aa    MW: 33828.1 Da    PI: 6.4287
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast03G262200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.75.5e-10142190355
                         HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          +h+++E+ RR++i +++  L++l+P +    sk   Ka +L + ++Y++sLq
  Brast03G262200.1.p 142 NSHSIAEKLRREKISERMKLLQDLVPGC----SKVTGKAVMLDEIINYVQSLQ 190
                         58*************************9....556*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000836.32E-11137194No hitNo description
SuperFamilySSF474599.95E-17137205IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.428139189IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.7E-7142190IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.3E-16142206IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.4E-10145195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MMEGGNGDRV GVERFASSGH GVLPMAWQSY TASSPAAPAR RDMESFAWAS VSRFPPEAGY  60
EHFPADLGGS DCKKKRRRPD EVLGADQAKA SYAADETEQG KDANGEEEAG PAASGQSKGK  120
GAGERHKEGY VHVRARSGQA TNSHSIAEKL RREKISERMK LLQDLVPGCS KVTGKAVMLD  180
EIINYVQSLQ RQVEFLSMKL STVNPRLGAD VESLLAKDIL PFPWASSTGP MGLSFSQEMM  240
PKPSQPGMLQ GDVHGMANSD MLRALMHSFS QEPASQMHLG RPFDGAVQMA YPPLVIGSED  300
MSIRTDQDGF HM*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17277KKKRRR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in cell elongation. Regulates the expression of a subset of genes involved in cell expansion by binding to the G-box motif. {ECO:0000269|PubMed:23161888}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast03G262200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014756140.10.0transcription factor bHLH49 isoform X1
SwissprotQ9CAA95e-52BH049_ARATH; Transcription factor bHLH49
TrEMBLA0A0Q3HYZ11e-180A0A0Q3HYZ1_BRADI; Uncharacterized protein
STRINGBRADI3G38890.11e-179(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29093785
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68920.32e-50bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Tian C, et al.
    An organ boundary-enriched gene regulatory network uncovers regulatory hierarchies underlying axillary meristem initiation.
    Mol. Syst. Biol., 2014. 10: p. 755
    [PMID:25358340]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]