PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Brast03G261300.1.p

Organism

Brachypodium stacei

Taxonomic ID

1071399

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

MYB

Protein Properties

Length: 325aa MW: 34549.8 Da PI: 6.3414

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Brast03G261300.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	56.4	6.7e-18	19	66	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT++Ede+l+++v+ +G g+W+ +r g++R++k+c++rw +yl Brast03G261300.1.p 19 KGPWTPDEDEKLLRYVQGHGHGSWRNLPRLAGLNRCGKSCRLRWTNYL 66 79********************************************97 PP
2	Myb_DNA-binding	52.4	1.2e-16	72	117	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++++eE++ +++++ lG++ W++ a +++ gRt++++k++w+++l Brast03G261300.1.p 72 RGKFSQEEEKTILHLHSILGNK-WSAMATRLP-GRTDNEIKNHWNTHL 117 89******************.*****.**********996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	17.43	14	66	IPR017930	Myb domain
SuperFamily	SSF46689	1.76E-30	17	113	IPR009057	Homeodomain-like
SMART	SM00717	2.4E-14	18	68	IPR001005	SANT/Myb domain
Pfam	PF00249	4.1E-16	19	66	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.2E-23	20	73	IPR009057	Homeodomain-like
CDD	cd00167	1.47E-11	21	66	No hit	No description
PROSITE profile	PS51294	25.079	67	121	IPR017930	Myb domain
SMART	SM00717	1.7E-15	71	119	IPR001005	SANT/Myb domain
Pfam	PF00249	2.1E-15	72	117	IPR001005	SANT/Myb domain
CDD	cd00167	1.66E-11	74	117	No hit	No description
Gene3D	G3DSA:1.10.10.60	4.7E-26	74	122	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 325 aa Download sequence Send to blast
MGRSPCCAEE GGGGGALKKG PWTPDEDEKL LRYVQGHGHG SWRNLPRLAG LNRCGKSCRL 60 RWTNYLRPDI KRGKFSQEEE KTILHLHSIL GNKWSAMATR LPGRTDNEIK NHWNTHLKKR 120 LIRDGFDPMT HRPRTDFFAF DALLALAALH QQQQQLLGPA AAASSSSAQM QDPGNAVLQL 180 QQAAKLQYLQ CLLNSIAPTT SSSAAAMPAD ATATASLGGA APASSSMAPA FSEAPVVTVG 240 DEAAGHQEGL LLSSDLEMNY SCSHGGGSMS LPPLADFSDG VVDDDGRCSA TASSGFVGGG 300 GSSPIPWPEF FFPDDDPFLV TDFL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1mse_C	2e-30	17	121	2	105	C-Myb DNA-Binding Domain
1msf_C	2e-30	17	121	2	105	C-Myb DNA-Binding Domain
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that acts as negative regulator of lateral root (LR) development. Required for normal auxin responses during LR development. May be part of a negative feedback loop stimulated specifically in the endodermis upon LR initiation to ensure that LRs are formed only in the correct place. {ECO:0000269\|PubMed:24902892}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Brast03G261300.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by abscisic acid (ABA), auxin and gravity in roots. {ECO:0000269\|PubMed:24902892}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003572317.1	1e-141	transcription factor MYB93
Swissprot	Q9S9Z2	1e-81	MYB93_ARATH; Transcription factor MYB93
TrEMBL	I1I829	1e-140	I1I829_BRADI; Uncharacterized protein
STRING	BRADI3G38807.1	1e-141	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1126	37	132

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G10280.1	3e-70	myb domain protein 92

Link Out ? help Back to Top
Phytozome	Brast03G261300.1.p

Publications ? help Back to Top
Gibbs DJ,Coates JC AtMYB93 is an endodermis-specific transcriptional regulator of lateral root development in arabidopsis. Plant Signal Behav, 2014. 9(10): p. e970406 [PMID:25482809]