PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Brast03G261300.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 325aa MW: 34549.8 Da PI: 6.3414 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 56.4 | 6.7e-18 | 19 | 66 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT++Ede+l+++v+ +G g+W+ +r g++R++k+c++rw +yl Brast03G261300.1.p 19 KGPWTPDEDEKLLRYVQGHGHGSWRNLPRLAGLNRCGKSCRLRWTNYL 66 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 52.4 | 1.2e-16 | 72 | 117 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++++eE++ +++++ lG++ W++ a +++ gRt++++k++w+++l Brast03G261300.1.p 72 RGKFSQEEEKTILHLHSILGNK-WSAMATRLP-GRTDNEIKNHWNTHL 117 89********************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.43 | 14 | 66 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.76E-30 | 17 | 113 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.4E-14 | 18 | 68 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.1E-16 | 19 | 66 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-23 | 20 | 73 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.47E-11 | 21 | 66 | No hit | No description |
PROSITE profile | PS51294 | 25.079 | 67 | 121 | IPR017930 | Myb domain |
SMART | SM00717 | 1.7E-15 | 71 | 119 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.1E-15 | 72 | 117 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.66E-11 | 74 | 117 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 4.7E-26 | 74 | 122 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 325 aa Download sequence Send to blast |
MGRSPCCAEE GGGGGALKKG PWTPDEDEKL LRYVQGHGHG SWRNLPRLAG LNRCGKSCRL 60 RWTNYLRPDI KRGKFSQEEE KTILHLHSIL GNKWSAMATR LPGRTDNEIK NHWNTHLKKR 120 LIRDGFDPMT HRPRTDFFAF DALLALAALH QQQQQLLGPA AAASSSSAQM QDPGNAVLQL 180 QQAAKLQYLQ CLLNSIAPTT SSSAAAMPAD ATATASLGGA APASSSMAPA FSEAPVVTVG 240 DEAAGHQEGL LLSSDLEMNY SCSHGGGSMS LPPLADFSDG VVDDDGRCSA TASSGFVGGG 300 GSSPIPWPEF FFPDDDPFLV TDFL* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1mse_C | 2e-30 | 17 | 121 | 2 | 105 | C-Myb DNA-Binding Domain |
1msf_C | 2e-30 | 17 | 121 | 2 | 105 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor that acts as negative regulator of lateral root (LR) development. Required for normal auxin responses during LR development. May be part of a negative feedback loop stimulated specifically in the endodermis upon LR initiation to ensure that LRs are formed only in the correct place. {ECO:0000269|PubMed:24902892}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Brast03G261300.1.p |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Induced by abscisic acid (ABA), auxin and gravity in roots. {ECO:0000269|PubMed:24902892}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_003572317.1 | 1e-141 | transcription factor MYB93 | ||||
Swissprot | Q9S9Z2 | 1e-81 | MYB93_ARATH; Transcription factor MYB93 | ||||
TrEMBL | I1I829 | 1e-140 | I1I829_BRADI; Uncharacterized protein | ||||
STRING | BRADI3G38807.1 | 1e-141 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1126 | 37 | 132 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G10280.1 | 3e-70 | myb domain protein 92 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Brast03G261300.1.p |
Publications ? help Back to Top | |||
---|---|---|---|
|