PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast03G257700.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bHLH
Protein Properties Length: 330aa    MW: 34535.7 Da    PI: 6.4038
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast03G257700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH46.75.7e-1594145155
                         CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +r++h ++Er+RR+++N+ ++ Lr+l+P++   + ++ + a+i   A++Y+k+L+
  Brast03G257700.1.p  94 QRMTHIAVERNRRRQMNDYLASLRSLMPPS---YVQRGDQASIIGGAINYVKELE 145
                         79****************************...9******************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.66E-1592149No hitNo description
Gene3DG3DSA:4.10.280.103.0E-1492149IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.22193144IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.7E-1793158IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.4E-1294145IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-1199150IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MALEAVVFSE ALFGCPAMPA EAAGQAWGGS TALAASSSNT YGAIEGPLEL DGGNACSWSA  60
PAPAPEEIAA PAGPGRRKRR RARSVKNVAE VESQRMTHIA VERNRRRQMN DYLASLRSLM  120
PPSYVQRGDQ ASIIGGAINY VKELEQLLQS LEARRHESPA VVSGSGASAD VAPFAGFFTF  180
PQYTMRAPDA ATATASSADD AAPVAAAGGN AGTDTTDIAA DATLTASSGS KQSAVAEIEA  240
TIVESHASLK VLTRRRGRPR QLLRLVAGLQ RHRLAVLHLN ATGAGHMALY SLSLKVEDDC  300
RLSSVDDIAA AVHSIIETIE QEEQQRSCS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17680RKRRR
294105RMTHIAVERNRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast03G257700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1076261e-76AK107626.1 Oryza sativa Japonica Group cDNA clone:002-131-D10, full insert sequence.
GenBankHQ8588611e-76HQ858861.1 Oryza sativa Japonica Group isolate UT1670 bHLH transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010235229.11e-137transcription factor bHLH96
TrEMBLA0A0Q3QAH71e-136A0A0Q3QAH7_BRADI; Uncharacterized protein
STRINGBRADI3G38510.11e-133(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74138156
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.17e-51bHLH family protein