PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast03G251100.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C2H2
Protein Properties Length: 466aa    MW: 50331.5 Da    PI: 9.1373
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast03G251100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.55.5e-066385123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        y+C++C++ F r  nL+ H r+H
  Brast03G251100.1.p 63 YVCEICNQGFQRDQNLQMHRRRH 85
                        9*********************9 PP
2zf-C2H211.70.00078143164223
                         EETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                          C  C+k +  +s++k H++t+
  Brast03G251100.1.p 143 ACARCSKAYAVHSDYKAHLKTC 164
                         6*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.25E-56086No hitNo description
Gene3DG3DSA:3.30.160.601.9E-56285IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.00526385IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.976385IPR007087Zinc finger, C2H2
PROSITE patternPS0002806585IPR007087Zinc finger, C2H2
SMARTSM00355110106136IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.600.001133163IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM00355230142169IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.58162196IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 466 aa     Download sequence    Send to blast
MLSSCALTAV PPPEAAAAGP PEPFRSAPIG TAAKRKRRPA GTPDPDAEVV SLTPRTLLES  60
DRYVCEICNQ GFQRDQNLQM HRRRHKVPWK LLKREEGDAA PRKRVFVCPE PSCLHHDPAH  120
ALGDLVGIKK HFRRKHSGHR QWACARCSKA YAVHSDYKAH LKTCGTRGHT CDCGRVFSRV  180
ESFIEHQDMC DAGGRPPRGD ATSSSAGRAG HQQQLHGAAA ASLSRTASSA SPSSGAADLV  240
GSPVGWPFPA TTTPSPTAQA QQRHNLELQL MPPRGTAVHR ASPAVVAQPD ADAANANATR  300
LQLSIGFLGA REREDINSNS NSNSSSEAED MAAARALRRE AREQLRLAAM EKAAADEARA  360
EARRHAELAE QELAGARRMR EQARAELGRA HAARDRAVRR VDAALLEITC YGCRGRFRAR  420
PAPASYDVSS VVTEGDAGND GQQMALLQYA DDQLPRGCRA MMDMN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C9e-18138192357Zinc finger protein JACKDAW
5b3h_F9e-18138192357Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor regulating starch metabolism by binding directly to the promoter of QQS (PubMed:21556057). The IDD14beta isoform attenuates the transcription factor activity by competitively forming heterodimers with reduced DNA-binding capacity(PubMed:21556057). Regulates lateral organ morphogenesis and gravitropic responses (PubMed:24039602). Has a redundant role with IDD16 in directing leaf and floral organ morphogenesis (PubMed:24039602). Involved in the establishment of auxin gradients through the regulation of auxin biosynthesis and transport (PubMed:24039602). {ECO:0000269|PubMed:21556057, ECO:0000269|PubMed:24039602}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast03G251100.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not regulated by auxin. {ECO:0000269|PubMed:24039602}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1067960.0AK106796.1 Oryza sativa Japonica Group cDNA clone:002-116-B04, full insert sequence.
GenBankAK1195950.0AK119595.1 Oryza sativa Japonica Group cDNA clone:002-117-D09, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003572281.10.0protein indeterminate-domain 16
SwissprotQ9C9X71e-126IDD14_ARATH; Protein indeterminate-domain 14
TrEMBLA0A2K2D1U90.0A0A2K2D1U9_BRADI; Uncharacterized protein
STRINGBRADI3G37890.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP105138124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01940.11e-101C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Arendsee ZW,Li L,Wurtele ES
    Coming of age: orphan genes in plants.
    Trends Plant Sci., 2014. 19(11): p. 698-708
    [PMID:25151064]
  2. Qu Y, et al.
    Peroxisomal CuAOζ and its product H2O2 regulate the distribution of auxin and IBA-dependent lateral root development in Arabidopsis.
    J. Exp. Bot., 2017. 68(17): p. 4851-4867
    [PMID:28992128]