PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast03G250100.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family HD-ZIP
Protein Properties Length: 346aa    MW: 36327.4 Da    PI: 6.9136
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast03G250100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.64.4e-18174228256
                         T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
            Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                         rk+ +++k+q   Lee F+++++++ +++  LAk+l+L  rqV vWFqNrRa+ k
  Brast03G250100.1.p 174 RKKLRLSKDQSAFLEESFKEHSTLNPKQKVALAKQLNLRPRQVEVWFQNRRARTK 228
                         778899***********************************************98 PP
2HD-ZIP_I/II128.33.2e-41174264192
         HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                         +kk+rlsk+q+++LEesF+e+++L+p++Kv+la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+ke +eLr +l
  Brast03G250100.1.p 174 RKKLRLSKDQSAFLEESFKEHSTLNPKQKVALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLHKELSELR-AL 263
                         69*************************************************************************************9.66 PP

         HD-ZIP_I/II  92 k 92 
                         k
  Brast03G250100.1.p 264 K 264
                         5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.3E-18156228IPR009057Homeodomain-like
SuperFamilySSF466894.71E-18162231IPR009057Homeodomain-like
PROSITE profilePS5007117.038170230IPR001356Homeobox domain
SMARTSM003896.6E-16172234IPR001356Homeobox domain
PfamPF000461.6E-15174228IPR001356Homeobox domain
CDDcd000869.24E-16174231No hitNo description
PROSITE patternPS000270205228IPR017970Homeobox, conserved site
SMARTSM003401.2E-25230273IPR003106Leucine zipper, homeobox-associated
PfamPF021831.2E-10230264IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MELGLSLGEA PAVVDAGTPA PELVLGLGVG AGRGGEERDK RRREAAAAAG AGWWAAAAAA  60
SPEPSVRLSL VSSHGLRWPS ETGRSEAASR GFDVNRMPSV AAGTEEEEDE DDPAAAAALS  120
SSPNDDSGGS FPFDLSARGG RLGSGEAAAA EAQAGGGERS SSRASDDDEG ASARKKLRLS  180
KDQSAFLEES FKEHSTLNPK QKVALAKQLN LRPRQVEVWF QNRRARTKLK QTEVDCEYLK  240
RCCETLTEEN RRLHKELSEL RALKTAQPFY MHLPATTLSM CPSCERVASN PAAASSSTTS  300
KVLSKAAAPE QRASSFAALF ASPRGGFPLA AQTRPPPPPA ASNCL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1222230RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast03G250100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2411960.0AK241196.1 Oryza sativa Japonica Group cDNA, clone: J065121H01, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003574599.11e-179homeobox-leucine zipper protein HOX27
SwissprotQ6YPD01e-139HOX27_ORYSJ; Homeobox-leucine zipper protein HOX27
TrEMBLI1I7P91e-178I1I7P9_BRADI; Uncharacterized protein
STRINGBRADI3G37810.11e-179(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP52093363
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.16e-70homeobox from Arabidopsis thaliana