PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast03G244700.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family MYB_related
Protein Properties Length: 175aa    MW: 18720.5 Da    PI: 4.1967
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast03G244700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding34.64.3e-114788346
                        SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                        ++T++Ed  +v+  +++G++ W+tIa +++ gR+++ +k+ w++
  Brast03G244700.1.p 47 PFTAQEDAEIVRRQREFGNR-WATIALHLN-GRSDNAVKNSWNS 88
                        79******************.*********.*********9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466896.16E-12986IPR009057Homeodomain-like
PROSITE profilePS5129414.6494094IPR017930Myb domain
SMARTSM007172.8E-104492IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.7E-144794IPR009057Homeodomain-like
CDDcd001674.27E-94787No hitNo description
PfamPF002492.2E-94788IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    Send to blast
MSAAADGGKK TAWTEEEEDE ALWRGVRERE HGGGGARTWD AIARAVPFTA QEDAEIVRRQ  60
REFGNRWATI ALHLNGRSDN AVKNSWNSTP RKQLPQVAMA GADDGRQGYD HEDDVDEVAA  120
ADEDNVPVCL ELFPLTAGGL KEAAAGEGDV VTDLTLGLPG GEAEEALVDL VLRL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast03G244700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010236715.18e-53transcription factor MYB44
TrEMBLI1I7J94e-61I1I7J9_BRADI; Uncharacterized protein
STRINGBRADI3G37360.16e-62(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP49603465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67300.12e-14myb domain protein r1