PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Brast03G239100.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | C2H2 | ||||||||
Protein Properties | Length: 196aa MW: 22386.3 Da PI: 9.2534 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.5 | 0.00045 | 159 | 179 | 2 | 22 |
EETTTTEEESSHHHHHHHHHH CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt 22 kC +C+ s+s+ks+L++H+r Brast03G239100.2.p 159 KCIICNASCSSKSDLESHLRG 179 6779***************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 8.81E-9 | 62 | 99 | No hit | No description |
SMART | SM00451 | 1.7E-4 | 64 | 98 | IPR003604 | Zinc finger, U1-type |
Pfam | PF12874 | 2.4E-7 | 67 | 91 | No hit | No description |
SMART | SM00355 | 0.15 | 67 | 91 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 69 | 91 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF12874 | 0.0027 | 128 | 144 | No hit | No description |
SuperFamily | SSF57667 | 8.51E-9 | 148 | 191 | No hit | No description |
SMART | SM00451 | 0.12 | 155 | 189 | IPR003604 | Zinc finger, U1-type |
Pfam | PF12874 | 5.1E-8 | 158 | 182 | No hit | No description |
SMART | SM00355 | 0.0084 | 158 | 182 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 160 | 182 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 196 aa Download sequence Send to blast |
MFVIPMANSV TSASMPRRSV KDRTEEWYQP PWHRRAEEED VSIDVAGLHT KTLSGVKRKR 60 TAETLLWVCS ICNITCHRET DVQSHLRGRR HQAKIENQQR EGRDIEAKLH EKKAPQLADK 120 NQKPASRWKC GICNANCTSE SDLETPHLDK NQKPASIWKC IICNASCSSK SDLESHLRGR 180 RHHWNIQAQR LEGSS* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Brast03G239100.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010235166.1 | 1e-118 | zinc finger homeobox protein 2 | ||||
TrEMBL | A0A2K2D1P1 | 1e-117 | A0A2K2D1P1_BRADI; Uncharacterized protein | ||||
TrEMBL | I1I7E2 | 1e-117 | I1I7E2_BRADI; Uncharacterized protein | ||||
STRING | BRADI3G36867.1 | 1e-117 | (Brachypodium distachyon) |
Link Out ? help Back to Top | |
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Phytozome | Brast03G239100.2.p |