PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast03G239100.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C2H2
Protein Properties Length: 271aa    MW: 31253.3 Da    PI: 7.9993
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast03G239100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.90.00069234254222
                         EETTTTEEESSHHHHHHHHHH CS
             zf-C2H2   2 kCpdCgksFsrksnLkrHirt 22 
                         kC +C+ s+s+ks+L++H+r 
  Brast03G239100.1.p 234 KCIICNASCSSKSDLESHLRG 254
                         6779***************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.69E-8137174No hitNo description
SMARTSM004511.7E-4139173IPR003604Zinc finger, U1-type
PfamPF128743.7E-7142166No hitNo description
SMARTSM003550.15142166IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280144166IPR007087Zinc finger, C2H2
PfamPF128740.0041203219No hitNo description
SuperFamilySSF576671.29E-8223266No hitNo description
SMARTSM004510.12230264IPR003604Zinc finger, U1-type
PfamPF128748.0E-8233257No hitNo description
SMARTSM003550.0084233257IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280235257IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MEFVADDIDG IPIPPPYAKM TVEALRQELL QEDIRQQIIV AELAERRKLE AQFERERERD  60
LHDDFGARFP QIIVPHRDTS PMPHVTSASM PRRSVKDRTE EWYQPPWHRR AEEEDVSIDV  120
AGLHTKTLSG VKRKRTAETL LWVCSICNIT CHRETDVQSH LRGRRHQAKI ENQQREGRDI  180
EAKLHEKKAP QLADKNQKPA SRWKCGICNA NCTSESDLET PHLDKNQKPA SIWKCIICNA  240
SCSSKSDLES HLRGRRHHWN IQAQRLEGSS *
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast03G239100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010235166.11e-171zinc finger homeobox protein 2
TrEMBLI1I7E21e-169I1I7E2_BRADI; Uncharacterized protein
STRINGBRADI3G36867.11e-170(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1416655