PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast03G237900.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family MYB
Protein Properties Length: 356aa    MW: 37941.3 Da    PI: 8.5911
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast03G237900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.64.3e-1673118147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         rg W + Ed +l ++v+++G+ +W++Ia+++  gR++k+c++rw++ 
  Brast03G237900.1.p  73 RGHWRPAEDAKLRELVALYGPQNWNLIAEKLD-GRSGKSCRLRWFNQ 118
                         899*****************************.***********996 PP
2Myb_DNA-binding49.11.3e-15126168246
                         SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          +++ eE+e+l  a++ +G++ W+ Iar ++ gRt++ +k++w+ 
  Brast03G237900.1.p 126 RPFSDEEEERLMGAHRFYGNK-WAMIARLFP-GRTDNAVKNHWHV 168
                         68*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.45768119IPR017930Myb domain
SMARTSM007176.1E-1472121IPR001005SANT/Myb domain
SuperFamilySSF466891.05E-2773166IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.0E-2674126IPR009057Homeodomain-like
CDDcd001673.30E-1376117No hitNo description
PfamPF139218.5E-1676136No hitNo description
PROSITE profilePS5129423.756120174IPR017930Myb domain
SMARTSM007172.0E-11124172IPR001005SANT/Myb domain
CDDcd001671.12E-9127167No hitNo description
Gene3DG3DSA:1.10.10.601.6E-19127173IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010199Biological Processorgan boundary specification between lateral organs and the meristem
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MPCSSAAPPW LLRVAAEQAA AASSSSSSTK GGGRVLTATM DDTGAAGGYN NNGQQESCSS  60
GQSSRQQQQL AARGHWRPAE DAKLRELVAL YGPQNWNLIA EKLDGRSGKS CRLRWFNQLD  120
PRISKRPFSD EEEERLMGAH RFYGNKWAMI ARLFPGRTDN AVKNHWHVIM ARKYREQSTA  180
YRRRKLNQAV QRKLDSSSSS SVVLSMPLSS CTAGAGHVDF QQQHLDNYSA GAYGFSFPHY  240
CLPPFHGGAA IAASVEEPSF CLFPGPGAAS VHHGVGLGGN GGDAPPPFLL PAAAHGGWIA  300
GVGRHEMARF VVSGEASGPP PPPFVDAARD HQGAHFDFDA AASPAFIDFL GVGAT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-33731737107B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00222DAPTransfer from AT1G69560Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast03G237900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0419831e-125BT041983.1 Zea mays full-length cDNA clone ZM_BFb0095C08 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014755863.11e-166transcription factor CSA
TrEMBLI1I7C41e-165I1I7C4_BRADI; Uncharacterized protein
STRINGBRADI3G36740.11e-166(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29438260
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69560.12e-71myb domain protein 105