PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Brast03G237700.1.p

Organism

Brachypodium stacei

Taxonomic ID

1071399

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

G2-like

Protein Properties

Length: 278aa MW: 30233.3 Da PI: 6.2449

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Brast03G237700.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	95.8	3.4e-30	16	69	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 +rlrWt LHerFv av++LGG+++AtPk++l++m+v+gLtl+h+kSHLQkYRl Brast03G237700.1.p 16 ARLRWTRPLHERFVLAVSELGGADRATPKSVLRAMGVQGLTLYHLKSHLQKYRL 69 7****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	5.3E-30	14	73	IPR009057	Homeodomain-like
SuperFamily	SSF46689	9.68E-15	15	72	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	3.6E-22	16	70	IPR006447	Myb domain, plants
Pfam	PF00249	5.5E-6	17	68	IPR001005	SANT/Myb domain
Pfam	PF14379	2.7E-15	118	157	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 278 aa Download sequence Send to blast
MSAQQQHGGV EAAARARLRW TRPLHERFVL AVSELGGADR ATPKSVLRAM GVQGLTLYHL 60 KSHLQKYRLA VSRDLAGNAG GGGLSNVDRS SSSASQSNEY DDDDDAAELR DSSRSMAQMQ 120 REVQRKLHEQ IEVQRTLQLR MEAQGRYLQS VLRRAQQVLA DHGSPEATKA ELSELVSAVD 180 TECLSSSSPP RQQHRSAYSS CVSSSSYSSE AESKAAGSKR RLHKGGCCTV EQPAQGKRTF 240 PFLQQMHDAQ AAAAAEAEPE EEEEAEDGSS SEFDLNM*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-18	14	73	1	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-18	14	73	1	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	2e-18	15	70	1	56	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	2e-18	15	70	1	56	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	2e-18	15	70	1	56	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	2e-18	15	70	1	56	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-18	14	73	1	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-18	14	73	1	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-18	14	73	1	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-18	14	73	1	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-18	14	73	1	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-18	14	73	1	60	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that may activate the transcription of specific genes involved in nitrogen uptake or assimilation (PubMed:15592750). Acts redundantly with MYR1 as a repressor of flowering and organ elongation under decreased light intensity (PubMed:21255164). Represses gibberellic acid (GA)-dependent responses and affects levels of bioactive GA (PubMed:21255164). {ECO:0000269\|PubMed:21255164, ECO:0000305\|PubMed:15592750}.
UniProt	Transcription factor that may act on the GAL1 promoter (PubMed:12008900). Acts redundantly with MYR2 as a repressor of flowering and organ elongation under decreased light intensity (PubMed:21255164). Represses gibberellic acid (GA)-dependent responses and affects levels of bioactive GA (PubMed:21255164). {ECO:0000269\|PubMed:21255164, ECO:0000305\|PubMed:12008900}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Brast03G237700.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by nitrogen deficiency. {ECO:0000269\|PubMed:15592750}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FP095207	1e-69	FP095207.1 Phyllostachys edulis cDNA clone: bphyem201h10, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014755397.1	1e-127	myb-related protein 2
Swissprot	Q9FK47	2e-46	PHLA_ARATH; Myb-related protein 1
Swissprot	Q9SQQ9	1e-46	PHL9_ARATH; Myb-related protein 2
TrEMBL	I1I7C1	1e-126	I1I7C1_BRADI; Uncharacterized protein
STRING	BRADI3G36710.1	1e-126	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP11264	30	38

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04030.3	1e-45	G2-like family protein

Link Out ? help Back to Top
Phytozome	Brast03G237700.1.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Nakano Y,Naito Y,Nakano T,Ohtsuki N,Suzuki K NSR1/MYR2 is a negative regulator of ASN1 expression and its possible involvement in regulation of nitrogen reutilization in Arabidopsis. Plant Sci., 2017. 263: p. 219-225 [PMID:28818378]